| Literature DB >> 32392781 |
Jee Soo Park1, Hyo Jung Lee1, Ahmad Almujalhem1, Hatem Hamed Althubiany2, Alqahatani Ali A1, Won Sik Jang1, Jongchan Kim1, Seung Hwan Lee1, Koon Ho Rha1, Won Sik Ham1.
Abstract
A high nuclear grade is crucial to predicting tumor recurrence and metastasis in clear cell renal cell carcinomas (ccRCCs). We aimed to compare the mRNA profiles of tumor tissues and preoperative plasma in patients with localized T1 stage ccRCCs, and to evaluate the potential of the plasma mRNA profile for predicting high-grade ccRCCs. Data from a prospective cohort (n = 140) were collected between November 2018 and November 2019. Frozen tumor tissues and plasma were used to measure PBRM1, BAP1, SET domain-containing 2 (SETD2), KDM5C, FOXC2, CLIP4, AQP1, DDX11, BAIAP2L1, and TMEM38B mRNA levels, and correlation with the Fuhrman grade was investigated. Multivariate logistic regression analysis revealed significant association between high-grade ccRCC and SETD2 and DDX11 mRNA levels in tissues (odds ratio (b) = 0.021, 95% confidence interval (CI): 0.001-0.466, p = 0.014; b = 6.116, 95% CI: 1.729-21.631, p = 0.005, respectively) and plasma (b = 0.028, 95% CI 0.007-0.119, p < 0.001; b = 1.496, 95% CI: 1.187-1.885, p = 0.001, respectively). High-grade ccRCC prediction models revealed areas under the curve of 0.997 and 0.971 and diagnostic accuracies of 97.86% and 92.86% for the frozen tissue and plasma, respectively. SETD2 and DDX11 mRNA can serve as non-invasive plasma biomarkers for predicting high-grade ccRCCs. Studies with long follow-ups are needed to validate the prognostic value of these biomarkers in ccRCCs.Entities:
Keywords: biomarker; clear cell renal cell carcinoma; high-grade; mRNA profile; plasma
Year: 2020 PMID: 32392781 PMCID: PMC7281002 DOI: 10.3390/cancers12051182
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Clinical and histopathological characteristics.
| Characteristic | Clinicopathological Data ( |
|---|---|
| Sex male/female | 97/43 (69.3/30.7%) |
| Age (years) | 56.0 ± 12.3 |
| Mean tumor diameter (cm) | 3.0 ± 1.5 |
| Median tumor diameter (cm) | 2.8 (1.7–4.0) |
| Fuhrman grade | |
| 1 | 7 (5.0%) |
| 2 | 63 (45.0%) |
| 3 | 58 (41.4%) |
| 4 | 12 (8.6%) |
Data are presented as mean ± standard deviation or median (interquartile range) for continuous variables, and as a percentage for categorical variables.
Figure 1SETD2 and DDX11 mRNA levels in frozen tissue and plasma. (a) Low-grade vs. high-grade; (b) Fuhrman grades.
Figure 2mRNA levels of target genes in low-grade vs. high-grade clear cell renal cell carcinoma (ccRCC): (a) frozen tissue; (b) plasma.
Univariate and multivariate logistic regression analyses of the mRNA levels of target genes associated with high-grade clear cell renal cell carcinoma.
| High-Grade ccRCC | Univariate β (95% CI) |
| Multivariate β (95% CI) |
|
|---|---|---|---|---|
|
| 0.998 (0.982–1.014) | 0.792 | ||
|
| 0.997 (0.988–1.007) | 0.548 | ||
|
| 0.987 (0.961–1.013) | 0.321 | ||
|
| 0.303 (0.177–0.520) | <0.001 | 0.021 (0.001–0.466) | 0.014 |
|
| 1.620 (0.488–5.383) | 0.431 | ||
|
| 0.984 (0.876–1.107) | 0.794 | ||
|
| 0.012 (0.002–0.077) | <0.001 | ||
|
| 2.625 (1.811–3.805) | <0.001 | 6.116 (1.729–21.631) | 0.005 |
|
| 1.039 (0.942–1.146) | 0.446 | ||
|
| 0.993 (0.959–1.029) | 0.700 | ||
|
| 0.995 (0.967–1.024) | 0.736 | ||
|
| 1.006 (0.993–1.019) | 0.367 | ||
|
| 0.939 (0.800–1.102) | 0.440 | ||
|
| 0.045 (0.015–0.132) | <0.001 | 0.028 (0.007–0.119) | <0.001 |
|
| 0.926 (0.818–1.048) | 0.225 | ||
|
| 1.013 (0.989–1.037) | 0.289 | ||
|
| 1.008 (0.988–1.028) | 0.451 | ||
|
| 1.504 (1.255–1.803) | <0.001 | 1.496 (1.187–1.885) | 0.001 |
|
| 1.010 (0.988–1.033) | 0.384 | ||
|
| 0.986 (0.972–1.001) | 0.062 |
ap-value calculated using logistic regression for univariate analysis; bp-value calculated using logistic regression for multivariate analysis.
Performance comparison of logistic regression models for prediction of high-grade clear cell renal cell carcinoma.
| Included Variables in Models | Sensitivity | Specificity | PPV | NPV | Accuracy (%) | AUC (95% CI) |
|---|---|---|---|---|---|---|
| 0.84 | 0.59 | 0.84 | 0.59 | 71.43% | 0.779 (0.704–0.853) | |
| 1.00 | 0.93 | 1.00 | 0.93 | 96.43% | 0.964 (0.931–0.997) | |
| 0.97 | 0.99 | 0.97 | 0.99 | 97.86% | 0.997 (0.992–1.000) | |
| 0.86 | 1.00 | 1.00 | 0.86 | 92.86% | 0.952 (0.918–0.987) | |
| 0.84 | 0.70 | 0.84 | 0.70 | 77.14% | 0.836 (0.771–0.900) | |
| 0.93 | 0.93 | 0.93 | 0.93 | 92.86% | 0.971 (0.947–0.994) |
PPV: positive predictive value; NPV: negative predictive value; AUC: area under the curve; CI: confidence interval.
Figure 3Receiver operating characteristic curves for the prediction models of high-grade clear cell renal cell carcinoma. The area under the curve was 0.997 (95% confidence interval (CI): 0.992–1.000) for SETD2 and DDX11 mRNA in frozen tissue, and 0.971 (95% CI: 0.947–0.994) in plasma.