Literature DB >> 32376953

Plant 22-nt siRNAs mediate translational repression and stress adaptation.

Huihui Wu1,2, Bosheng Li1, Hiro-Oki Iwakawa3,4, Yajie Pan1,5, Xianli Tang1,6, Qianyan Ling-Hu1, Yuelin Liu1, Shixin Sheng1, Li Feng1, Hong Zhang1, Xinyan Zhang2,7, Zhonghua Tang5, Xinli Xia6, Jixian Zhai1, Hongwei Guo8.   

Abstract

Small interfering RNAs (siRNAs) are essential for proper development and immunity in eukaryotes1. Plants produce siRNAs with lengths of 21, 22 or 24 nucleotides. The 21- and 24-nucleotide species mediate cleavage of messenger RNAs and DNA methylation2,3, respectively, but the biological functions of the 22-nucleotide siRNAs remain unknown. Here we report the identification and characterization of a group of endogenous 22-nucleotide siRNAs that are generated by the DICER-LIKE 2 (DCL2) protein in plants. When cytoplasmic RNA decay and DCL4 are deficient, the resulting massive accumulation of 22-nucleotide siRNAs causes pleiotropic growth disorders, including severe dwarfism, meristem defects and pigmentation. Notably, two genes that encode nitrate reductases-NIA1 and NIA2-produce nearly half of the 22-nucleotide siRNAs. Production of 22-nucleotide siRNAs triggers the amplification of gene silencing and induces translational repression both gene specifically and globally. Moreover, these 22-nucleotide siRNAs preferentially accumulate upon environmental stress, especially those siRNAs derived from NIA1/2, which act to restrain translation, inhibit plant growth and enhance stress responses. Thus, our research uncovers the unique properties of 22-nucleotide siRNAs, and reveals their importance in plant adaptation to environmental stresses.

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Year:  2020        PMID: 32376953     DOI: 10.1038/s41586-020-2231-y

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  47 in total

1.  An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs.

Authors:  Nicolas Bouché; Dominique Lauressergues; Virginie Gasciolli; Hervé Vaucheret
Journal:  EMBO J       Date:  2006-06-29       Impact factor: 11.598

2.  Plant biology. Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis.

Authors:  Xinyan Zhang; Ying Zhu; Xiaodan Liu; Xinyu Hong; Yang Xu; Ping Zhu; Yang Shen; Huihui Wu; Yusi Ji; Xing Wen; Chen Zhang; Qiong Zhao; Yichuan Wang; Jian Lu; Hongwei Guo
Journal:  Science       Date:  2015-04-03       Impact factor: 47.728

Review 3.  MicroRNAs and Their Regulatory Roles in Plant-Environment Interactions.

Authors:  Xianwei Song; Yan Li; Xiaofeng Cao; Yijun Qi
Journal:  Annu Rev Plant Biol       Date:  2019-03-08       Impact factor: 26.379

Review 4.  Small RNA-based antimicrobial immunity.

Authors:  Zhongxin Guo; Yang Li; Shou-Wei Ding
Journal:  Nat Rev Immunol       Date:  2019-01       Impact factor: 53.106

5.  Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning.

Authors:  Ian R Henderson; Xiaoyu Zhang; Cheng Lu; Lianna Johnson; Blake C Meyers; Pamela J Green; Steven E Jacobsen
Journal:  Nat Genet       Date:  2006-05-14       Impact factor: 38.330

6.  DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.

Authors:  Zhixin Xie; Edwards Allen; April Wilken; James C Carrington
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-29       Impact factor: 11.205

7.  Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense.

Authors:  Angélique Deleris; Javier Gallego-Bartolome; Jinsong Bao; Kristin D Kasschau; James C Carrington; Olivier Voinnet
Journal:  Science       Date:  2006-06-01       Impact factor: 47.728

Review 8.  The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis.

Authors:  Nicolas G Bologna; Olivier Voinnet
Journal:  Annu Rev Plant Biol       Date:  2014-02-26       Impact factor: 26.379

Review 9.  The expanding world of small RNAs in plants.

Authors:  Filipe Borges; Robert A Martienssen
Journal:  Nat Rev Mol Cell Biol       Date:  2015-11-04       Impact factor: 94.444

10.  Identification and characterization of a chlorate-resistant mutant of Arabidopsis thaliana with mutations in both nitrate reductase structural genes NIA1 and NIA2.

Authors:  J Q Wilkinson; N M Crawford
Journal:  Mol Gen Genet       Date:  1993-05
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  34 in total

1.  Slice and Dice: DCL2 Mediates the Production of 22-Nucleotide siRNAs that Influence Trait Variation in Soybean.

Authors:  Matthias Benoit
Journal:  Plant Cell       Date:  2020-10-22       Impact factor: 11.277

2.  Soybean DICER-LIKE2 Regulates Seed Coat Color via Production of Primary 22-Nucleotide Small Interfering RNAs from Long Inverted Repeats.

Authors:  Jinbu Jia; Ronghuan Ji; Zhuowen Li; Yiming Yu; Mayumi Nakano; Yanping Long; Li Feng; Chao Qin; Dongdong Lu; Junpeng Zhan; Rui Xia; Blake C Meyers; Bin Liu; Jixian Zhai
Journal:  Plant Cell       Date:  2020-10-19       Impact factor: 11.277

3.  The IL-23/IL-17 axis promotes the formation of retinal neovascularization by activating the NLRP3 inflammasome in macrophages in an experimental retinopathy mouse model.

Authors:  Ailing Sui; Xiuping Chen; Yiyun Yao; Yixuan Yao; Xi Shen; Yanji Zhu; Bing Xie
Journal:  Immunology       Date:  2021-08-30       Impact factor: 7.397

4.  An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection.

Authors:  Ganna Reshetnyak; Jonathan M Jacobs; Florence Auguy; Coline Sciallano; Lisa Claude; Clemence Medina; Alvaro L Perez-Quintero; Aurore Comte; Emilie Thomas; Adam Bogdanove; Ralf Koebnik; Boris Szurek; Anne Dievart; Christophe Brugidou; Severine Lacombe; Sebastien Cunnac
Journal:  Sci Rep       Date:  2021-12-17       Impact factor: 4.379

5.  Cooperative recruitment of RDR6 by SGS3 and SDE5 during small interfering RNA amplification in Arabidopsis.

Authors:  Manabu Yoshikawa; Yong-Woon Han; Hirofumi Fujii; Shu Aizawa; Tatsuya Nishino; Masayuki Ishikawa
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-24       Impact factor: 11.205

6.  Genome-Wide Investigation of the NF-X1 Gene Family in Populus trichocarpa Expression Profiles during Development and Stress.

Authors:  Fang He; Yu-Jie Shi; Jia-Xuan Mi; Kuang-Ji Zhao; Xing-Lei Cui; Liang-Hua Chen; Han-Bo Yang; Fan Zhang; Qian Zhao; Jin-Liang Huang; Xue-Qin Wan
Journal:  Int J Mol Sci       Date:  2021-04-28       Impact factor: 5.923

7.  Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis.

Authors:  Meetali Singh; Eric Cornes; Blaise Li; Piergiuseppe Quarato; Loan Bourdon; Florent Dingli; Damarys Loew; Simone Proccacia; Germano Cecere
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

8.  The role of RST1 and RIPR proteins in plant RNA quality control systems.

Authors:  Mariann Auth; Tünde Nyikó; Andor Auber; Dániel Silhavy
Journal:  Plant Mol Biol       Date:  2021-04-17       Impact factor: 4.076

9.  Recent Advances in Plant Gene Silencing Methods.

Authors:  Prachi Pandey; Kirankumar S Mysore; Muthappa Senthil-Kumar
Journal:  Methods Mol Biol       Date:  2022

Review 10.  Viroids as a Tool to Study RNA-Directed DNA Methylation in Plants.

Authors:  Michael Wassenegger; Athanasios Dalakouras
Journal:  Cells       Date:  2021-05-13       Impact factor: 6.600

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