| Literature DB >> 32375067 |
Zebin Zhao1, Xin Li2, Feng Liu3, Gaofeng Zhu4, Chunfeng Ma3, Liangxu Wang5.
Abstract
COVID-19 (Corona Virus Disease 2019) is globally spreading and the international cooperation is urgently required in joint prevention and control of the epidemic. Using the Maximum-Hasting (MH) parameter estimation method and the modified Susceptible Exposed Infectious Recovered (SEIR) model, the spread of the epidemic under three intervention scenarios (suppression, mitigation, mildness) is simulated and predicted in South Africa, Egypt, and Algeria, where the epidemic situations are severe. The studies are also conducted in Nigeria, Senegal and Kenya, where the epidemic situations are growing rapidly and the socio-economic are relatively under-developed, resulting in more difficulties in preventing the epidemic. Results indicated that the epidemic can be basically controlled in late April with strict control of scenario one, manifested by the circumstance in the South Africa and Senegal. Under moderate control of scenario two, the number of infected people will increase by 1.43-1.55 times of that in scenario one, the date of the epidemic being controlled will be delayed by about 10 days, and Algeria, Nigeria, and Kenya are in accordance with this situation. In the third scenario of weak control, the epidemic will be controlled by late May, the total number of infected cases will double that in scenario two, and Egypt is in line with this prediction. In the end, a series of epidemic controlling methods are proposed, including patient quarantine, close contact tracing, population movement control, government intervention, city and county epidemic risk level classification, and medical cooperation and the Chinese assistance.Entities:
Keywords: Africa; COVID-19; Parameter estimation; Prediction; SEIR; Scenario analysis
Mesh:
Year: 2020 PMID: 32375067 PMCID: PMC7182531 DOI: 10.1016/j.scitotenv.2020.138959
Source DB: PubMed Journal: Sci Total Environ ISSN: 0048-9697 Impact factor: 7.963
The major estimated parameters interval of the improved SEIR model for the computational implementation of MH sampling.
| Parameter | Sampling ranges | Reference for the parameter value selection |
|---|---|---|
| Protection rate ( | 0.07–0.17 | China: 0.172, Wuhan: 0.085 ( |
| Infection rate ( | 0.7–1 | China: 0.78735 ( |
| Average incubation time ( | 5–7 | 5.2 days ( |
| Average quarantined Time ( | 7–14 | 9.1 days ( |
| Cure rate ( | 0.1–0.5 | 1/7 ( |
| Mortality rate ( | 0.001–0.05 | 0.001–0.03 ( |
Fig. 1Flow chart of experimental.
Fig. 2The probability distributions of parameters' samples for improved SEIR epidemic model (α = 0.1195, β = 0.8618, γ−1 = 5.3904, δ−1 = 9.6447, λ = 0.2910, κ = 0.0253).
Statistics of optimized parameters' results of MH (including statistics: mean, mode, median, variance, standard deviation and skewness).
| Parameter | Statistics | |||||
|---|---|---|---|---|---|---|
| Mean | Mode | Median | Variance | Standard deviation | Skewness | |
| 0.1195 | 0.1074 | 0.1195 | 0.0007 | 0.0267 | 0.0093 | |
| 0.8618 | 0.8874 | 0.8666 | 0.0063 | 0.0795 | −0.1766 | |
| 5.3904 | 5.0471 | 5.2752 | 0.1394 | 0.3737 | 1.6305 | |
| 9.6447 | 9.0056 | 9.4347 | 0.6373 | 0.7983 | 1.8039 | |
| 0.2910 | 0.3040 | 0.2878 | 0.0115 | 0.1073 | 0.0739 | |
| 0.0253 | 0.0877 | 0.0689 | 0.0021 | 0.0337 | 0.0041 | |
Fig. 3Growth trends of the confirmed cases in South Africa, Egypt, Algeria, Nigeria, Senegal, and Kenya.
Fig. 4Simulated prediction of epidemic spreading trends in (a) South Africa, (b) Egypt, (c) Algeria, (d) Nigeria, (e) Senegal and (f) Kenya (both Obs1 and Obs2 mean the confirmed cases before and after March 25, R0 is the basic reproduction number).
| Parameter | Country | Mean | Mode | Median | Variance | Standard deviation | Skewness |
|---|---|---|---|---|---|---|---|
| South Africa | 0.1197 | 0.1403 | 0.1196 | 0.0007 | 0.0268 | −0.0091 | |
| Egypt | 0.1184 | 0.0839 | 0.1179 | 0.0007 | 0.0267 | −0.0099 | |
| Algeria | 0.1193 | 0.1279 | 0.1190 | 0.0007 | 0.0269 | 0.0220 | |
| Nigeria | 0.1205 | 0.0997 | 0.1209 | 0.0007 | 0.0268 | 0.0276 | |
| Senegal | 0.1193 | 0.0885 | 0.1197 | 0.0007 | 0.0267 | −0.0146 | |
| Kenya | 0.1199 | 0.1038 | 0.1198 | 0.0007 | 0.0265 | 0.0400 | |
| Average | 0.1195 | 0.1074 | 0.1195 | 0.0007 | 0.0267 | 0.0093 | |
| South Africa | 0.8595 | 0.8087 | 0.8639 | 0.0062 | 0.0790 | −0.2021 | |
| Egypt | 0.8612 | 0.9680 | 0.8649 | 0.0064 | 0.0800 | −0.2292 | |
| Algeria | 0.8599 | 0.9639 | 0.8641 | 0.0064 | 0.0797 | −0.1682 | |
| Nigeria | 0.8643 | 0.7685 | 0.8701 | 0.0063 | 0.0794 | −0.1675 | |
| Senegal | 0.8624 | 0.9638 | 0.8679 | 0.0064 | 0.0797 | −0.1702 | |
| Kenya | 0.8633 | 0.8516 | 0.8688 | 0.0063 | 0.0793 | −0.1225 | |
| Average | 0.8618 | 0.8874 | 0.8666 | 0.0063 | 0.0795 | −0.1766 | |
| South Africa | 5.4012 | 5.0043 | 5.2803 | 0.1454 | 0.3814 | 1.6340 | |
| Egypt | 5.3892 | 5.1605 | 5.2741 | 0.1385 | 0.3722 | 1.6141 | |
| Algeria | 5.3900 | 5.0594 | 5.2719 | 0.1415 | 0.3761 | 1.6595 | |
| Nigeria | 5.3891 | 5.0006 | 5.2813 | 0.1370 | 0.3701 | 1.6577 | |
| Senegal | 5.3874 | 5.0138 | 5.2723 | 0.1402 | 0.3745 | 1.6352 | |
| Kenya | 5.3856 | 5.0445 | 5.2714 | 0.1354 | 0.3679 | 1.5824 | |
| Average | 5.3904 | 5.0471 | 5.2752 | 0.1394 | 0.3737 | 1.6305 | |
| South Africa | 9.6670 | 8.9812 | 9.4425 | 0.6648 | 0.8153 | 1.8199 | |
| Egypt | 9.6417 | 9.1667 | 9.4356 | 0.6309 | 0.7943 | 1.8128 | |
| Algeria | 9.6452 | 8.9884 | 9.4253 | 0.6416 | 0.8010 | 1.8536 | |
| Nigeria | 9.6411 | 8.9992 | 9.4445 | 0.6286 | 0.7928 | 1.8412 | |
| Senegal | 9.6389 | 8.8769 | 9.4336 | 0.6360 | 0.7975 | 1.7504 | |
| Kenya | 9.6341 | 9.0214 | 9.4266 | 0.6221 | 0.7888 | 1.7457 | |
| Average | 9.6447 | 9.0056 | 9.4347 | 0.6373 | 0.7983 | 1.8039 | |
| South Africa | 0.2940 | 0.2525 | 0.2927 | 0.0115 | 0.1070 | 0.0611 | |
| Egypt | 0.2911 | 0.2856 | 0.2908 | 0.0111 | 0.1054 | 0.1058 | |
| Algeria | 0.2909 | 0.4087 | 0.2875 | 0.0115 | 0.1073 | 0.0329 | |
| Nigeria | 0.2908 | 0.3796 | 0.2856 | 0.0117 | 0.1080 | 0.0996 | |
| Senegal | 0.2891 | 0.3788 | 0.2828 | 0.0115 | 0.1072 | 0.0513 | |
| Kenya | 0.2904 | 0.1185 | 0.2875 | 0.0119 | 0.1089 | 0.0924 | |
| Average | 0.2910 | 0.3040 | 0.2878 | 0.0115 | 0.1073 | 0.0739 | |
| South Africa | 0.0251 | 0.0213 | 0.0247 | 0.0002 | 0.0132 | 0.0123 | |
| Egypt | 0.0252 | 0.0278 | 0.0251 | 0.0002 | 0.0133 | −0.0030 | |
| Algeria | 0.0253 | 0.4087 | 0.2875 | 0.0115 | 0.1073 | −0.0131 | |
| Nigeria | 0.0255 | 0.0420 | 0.0252 | 0.0002 | 0.0420 | 0.0089 | |
| Senegal | 0.0254 | 0.0226 | 0.0256 | 0.0002 | 0.0226 | 0.0075 | |
| Kenya | 0.0255 | 0.0040 | 0.0255 | 0.0002 | 0.0040 | 0.0119 | |
| Average | 0.0253 | 0.0877 | 0.0689 | 0.0021 | 0.0337 | 0.0041 |