Literature DB >> 32372397

Nucleolus-associated chromatin domains are maintained under heat stress, despite nucleolar reorganization in Arabidopsis thaliana.

Ariadna Picart-Picolo1,2, Claire Picart1,2, Nathalie Picault1,2, Frederic Pontvianne3,4.   

Abstract

Several layers of mechanisms participate in plant adaptation to heat-stress. For example, the plant metabolism switches from cell growth mode to stress adaptation mode. Ribosome biogenesis is one of the most energy costly pathways. That biogenesis process occurs in the nucleolus, the largest nuclear compartment, whose structure is highly dependent on this pathway. We used a nucleolar marker to track the structure of the nucleolus, and revealed a change in its sub-nucleolar distribution under heat stress. In addition, the nucleolus is implicated in other cellular processes, such as genome organization within the nucleus. However, our analyses of nucleolus-associated chromatin domains under heat stress did not reveal significant differences compared to the control plants, suggesting a lack of connection between two of the main functions of the nucleolus: ribosome biogenesis and nuclear organization.

Entities:  

Keywords:  Genome organization; Heat-stress; Nucleolus; Ribosomal RNA

Mesh:

Substances:

Year:  2020        PMID: 32372397     DOI: 10.1007/s10265-020-01201-3

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  41 in total

1.  Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation.

Authors:  Keith W Earley; Frédéric Pontvianne; Andrzej T Wierzbicki; Todd Blevins; Sarah Tucker; Pedro Costa-Nunes; Olga Pontes; Craig S Pikaard
Journal:  Genes Dev       Date:  2010-06-01       Impact factor: 11.361

Review 2.  The nucleolus under stress.

Authors:  Séverine Boulon; Belinda J Westman; Saskia Hutten; François-Michel Boisvert; Angus I Lamond
Journal:  Mol Cell       Date:  2010-10-22       Impact factor: 17.970

Review 3.  Nucleolin: dual roles in rDNA chromatin transcription.

Authors:  Nathalie Durut; Julio Sáez-Vásquez
Journal:  Gene       Date:  2014-09-16       Impact factor: 3.688

4.  Coexisting Liquid Phases Underlie Nucleolar Subcompartments.

Authors:  Marina Feric; Nilesh Vaidya; Tyler S Harmon; Diana M Mitrea; Lian Zhu; Tiffany M Richardson; Richard W Kriwacki; Rohit V Pappu; Clifford P Brangwynne
Journal:  Cell       Date:  2016-05-19       Impact factor: 41.582

Review 5.  Stressing out over long noncoding RNA.

Authors:  Timothy E Audas; Stephen Lee
Journal:  Biochim Biophys Acta       Date:  2015-07-02

6.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

7.  A role for MED14 and UVH6 in heterochromatin transcription upon destabilization of silencing.

Authors:  Pierre Bourguet; Stève de Bossoreille; Leticia López-González; Marie-Noëlle Pouch-Pélissier; Ángeles Gómez-Zambrano; Anthony Devert; Thierry Pélissier; Romain Pogorelcnik; Isabelle Vaillant; Olivier Mathieu
Journal:  Life Sci Alliance       Date:  2018-12-12

Review 8.  Genome Organization in and around the Nucleolus.

Authors:  Cristiana Bersaglieri; Raffaella Santoro
Journal:  Cells       Date:  2019-06-12       Impact factor: 6.600

9.  Chromosome-specific NOR inactivation explains selective rRNA gene silencing and dosage control in Arabidopsis.

Authors:  Chinmayi Chandrasekhara; Gireesha Mohannath; Todd Blevins; Frederic Pontvianne; Craig S Pikaard
Journal:  Genes Dev       Date:  2016-01-07       Impact factor: 11.361

10.  Nucleolus association of chromosomal domains is largely maintained in cellular senescence despite massive nuclear reorganisation.

Authors:  Stefan Dillinger; Tobias Straub; Attila Németh
Journal:  PLoS One       Date:  2017-06-02       Impact factor: 3.240

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  6 in total

1.  Toward an understanding of nuclear substructures beyond their classical functions.

Authors:  Yuki Sakamoto; Takuya Sakamoto
Journal:  J Plant Res       Date:  2020-07       Impact factor: 2.629

2.  Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis.

Authors:  Lanxia Li; Haofei Luo; Do-Hwan Lim; Lu Han; Yan Li; Xiang-Dong Fu; Yijun Qi
Journal:  Nat Plants       Date:  2021-10-14       Impact factor: 15.793

3.  Modeling the 3D genome of plants.

Authors:  Marco Di Stefano; Hans-Wilhelm Nützmann
Journal:  Nucleus       Date:  2021-12       Impact factor: 4.197

4.  Upon heat stress processing of ribosomal RNA precursors into mature rRNAs is compromised after cleavage at primary P site in Arabidopsis thaliana.

Authors:  T Darriere; E Jobet; D Zavala; M L Escande; N Durut; A de Bures; F Blanco-Herrera; E A Vidal; M Rompais; C Carapito; S Gourbiere; J Sáez-Vásquez
Journal:  RNA Biol       Date:  2021-12-31       Impact factor: 4.766

5.  Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response.

Authors:  Ariadna Picart-Picolo; Stefan Grob; Nathalie Picault; Michal Franek; Christel Llauro; Thierry Halter; Tom R Maier; Edouard Jobet; Julie Descombin; Panpan Zhang; Vijayapalani Paramasivan; Thomas J Baum; Lionel Navarro; Martina Dvořáčková; Marie Mirouze; Frédéric Pontvianne
Journal:  Genome Res       Date:  2020-10-08       Impact factor: 9.043

Review 6.  Nuclear dynamics: Formation of bodies and trafficking in plant nuclei.

Authors:  Eduardo Muñoz-Díaz; Julio Sáez-Vásquez
Journal:  Front Plant Sci       Date:  2022-08-23       Impact factor: 6.627

  6 in total

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