Lucie Brulíkova1, Tereza Volná1, Jan Hlavac2. 1. Department of Organic Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 779 00 Olomouc, Czech Republic. 2. Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacký University, Hněvotínská 5, 779 00 Olomouc, Czech Republic.
Abstract
In this report, fluorescent systems consisting of two Rhodamine B moieties were designed and synthesized employing the solid-phase synthetic approach. The compounds were tested for their chemosensing behavior upon the addition of various metal ions over UV-vis absorption and fluorescence spectra. Two probes, 1 and 3, exhibited the best affinity to Sn(IV) ions, resulting in strong fluorescence as well as absorbance enhancement with the low detection limits (2.78 and 2.56 μM, respectively). Compound 3 having two excitations as well as emission maxima was used for the construction of the light dimmer with the alarm for detection of too low pH. The system is operated by a change of pH and can be used as a molecular electronic device.
In this report, fluorescent systems consisting of two Rhodamine B moieties were designed and synthesized employing the solid-phase synthetic approach. The compounds were tested for their chemosensing behavior upon the addition of various metal ions over UV-vis absorption and fluorescence spectra. Two probes, 1 and 3, exhibited the best affinity to Sn(IV) ions, resulting in strong fluorescence as well as absorbance enhancement with the low detection limits (2.78 and 2.56 μM, respectively). Compound 3 having two excitations as well as emission maxima was used for the construction of the light dimmer with the alarm for detection of too low pH. The system is operated by a change of pH and can be used as a molecular electronic device.
Rhodamine B (RhB) is
a widely used fluorescent dye that has found
a great deal of interest in many applications, including pH determination,[1] redox,[2] or metal[3,4] sensing. RhB is distinguished due to its good price availability
in small as well as higher quantity, chemical stability, photostability,
advantageous spectroscopic, mainly fluorescent properties, etc. Therefore,
this dye is commonly used in the construction of new probes and sensors
solely or in combination with other dyes. This combination, often
establishing the FRET effect, enables us to detect some markers or
construct a device for molecular electronics.Fluorescent properties
of conjugates between Rhodamine B and other
dyes affected by metal ions enabled the construction of various molecular
logic gates.[5−7] For example, the combination of RhB with indole and
naphthalene fluorescent dyes exhibited sequential dual FRET processes
used for multiple logic gate operations via the response signals of
Fe(III) and Hg(II) ions.[5] A combination
of Rhodamine B with fluorescein was used for the construction of a
“half adder” molecular logic gate in microfluidic devices
operated by pH change.[6] The change of UV–vis
and fluorescence of the RhB-nitrosalicyl derivative in the presence
of Cu(II) and Al(III) ions was used for the construction of the YES
logic function with an INHIBIT logic gate.[7]The fluorophores having two rhodamine moieties in one molecule
were used for the detection of metal ions as well. However, the studies
are limited mainly to Fe(III)[8−11] and Hg(II),[12−16] rarely to Cu(II)[17,18] ion selectivity. Some of these
bis-Rhodamine B dyes were used for the construction of molecular logic
gates of the INHIBIT type.[8,16,18]Here, we report a study of new bis-Rhodamine B derivatives
suitable
for the detection of metal ions with increased selectivity to the
tetravalent tin. Moreover, our molecules might be suitable for the
construction of the light dimmer operated by pH connected with a detector
of too low pH value.
Results and Discussion
Solid-Phase Synthesis of
Compounds 1–4
The novel
chemosensors bearing two Rhodamine B
fluorophores 1–4 are depicted in Figure . They are composed of the
central pyrimidine core enabling substitution in positions 4, 5, and
6 to implement various moieties with, namely, NH groups as typical
chelating agents. We chose position 6 for binding of rhodamine dyes
via p-phenylenediamine (all probes) and position
5 for binding of other substituents via an amino group (probes 1 and 2) or longer linker (probes 3 and 4). This substitution leads to the systems with
rhodamine dyes bound via aliphatic and aromatic amine groups. Furthermore,
the 2-(2-ethoxyethoxy)acetic acid moiety was selected as a substituent
in position 4 to increase the system solubility. Moreover, we substituted
the nitrogen of one rhodamine unit by the methyl group (probes 2 and 4). This alkylation should block the spirolactam
cyclization of one rhodamine moiety, assuring to keep fluorescence
regardless of the analyte pH. The synthesis is based on the knowledge
reported earlier for similar systems with one rhodamine dye.[19,20] We extended the reported synthesis for further reaction sequences
and bound another rhodamine moiety (Schemes and 2).
Figure 1
Derivatives 1–4 bearing two Rhodamine
moieties designed as new chemosensors.
Scheme 1
Solid-Phase Synthesis of Derivatives 1 and 2
(i) 1-(9H-fluoren-9-yl)-3-oxo-2,7,10-trioxa-4-azadodecan-12-oic
acid (PEG),
HOBt, DMAP, DIC, DMF/DCM (1:1), rt, 16 h. (ii) 50% piperidine, DMF,
rt, 15 min. (iii) 4,6-dichloro-5-nitro-pyrimidine, DIEA, dry DMF,
rt, 2 h. (iv) p-phenylenediamine, DIEA, dry DMF,
rt, 2 h. (v) Rhodamine B, HOBt, DIC, DMF/DCM (1:1), rt, 16 h. (vi)
Na2S2O4, K2CO3, ethyl viologen diiodide, H2O/DCM, rt, 16 h. (vii) 4-nitrobenzenesulfonyl
chloride (4-Nos-Cl), 2,6-lutidine, DCM, rt, 16 h. (viii) MeOH, PPh3, DIAD, THF, rt, 0.5 h. (ix) 2-mercaptoethanol, DBU, DMF,
rt, 5 min. (x) SnCl2.2H2O, DIEA, DMF, N2, rt, 16 h. (xi) 50% TFA in DCM, rt, 1 h.
Scheme 2
Solid-Phase Synthesis of Derivatives 3 and 4
(i) 1-(9H-fluoren-9-yl)-3-oxo-2,7,10-trioxa-4-azadodecan-12-oic
acid (PEG),
HOBt, DMAP, DIC, DMF/DCM (1:1), rt, 16 h. (ii) 50% piperidine, DMF,
rt, 15 min. (iii) Rhodamine B, HOBt, DIC, DMF/DCM (1:1), rt, 16 h.
(iv) 50% TFA in DCM, rt, 1 h.
Derivatives 1–4 bearing two Rhodamine
moieties designed as new chemosensors.
Solid-Phase Synthesis of Derivatives 1 and 2
(i) 1-(9H-fluoren-9-yl)-3-oxo-2,7,10-trioxa-4-azadodecan-12-oic
acid (PEG),
HOBt, DMAP, DIC, DMF/DCM (1:1), rt, 16 h. (ii) 50% piperidine, DMF,
rt, 15 min. (iii) 4,6-dichloro-5-nitro-pyrimidine, DIEA, dry DMF,
rt, 2 h. (iv) p-phenylenediamine, DIEA, dry DMF,
rt, 2 h. (v) Rhodamine B, HOBt, DIC, DMF/DCM (1:1), rt, 16 h. (vi)
Na2S2O4, K2CO3, ethyl viologen diiodide, H2O/DCM, rt, 16 h. (vii) 4-nitrobenzenesulfonyl
chloride (4-Nos-Cl), 2,6-lutidine, DCM, rt, 16 h. (viii) MeOH, PPh3, DIAD, THF, rt, 0.5 h. (ix) 2-mercaptoethanol, DBU, DMF,
rt, 5 min. (x) SnCl2.2H2O, DIEA, DMF, N2, rt, 16 h. (xi) 50% TFA in DCM, rt, 1 h.
Solid-Phase Synthesis of Derivatives 3 and 4
(i) 1-(9H-fluoren-9-yl)-3-oxo-2,7,10-trioxa-4-azadodecan-12-oic
acid (PEG),
HOBt, DMAP, DIC, DMF/DCM (1:1), rt, 16 h. (ii) 50% piperidine, DMF,
rt, 15 min. (iii) Rhodamine B, HOBt, DIC, DMF/DCM (1:1), rt, 16 h.
(iv) 50% TFA in DCM, rt, 1 h.
Spectral Properties
of 1–4
First, probes 1–4 were characterized
by UV–vis (Figure S13 to S16) and
fluorescence spectroscopy (Table ). The UV–vis absorption spectra of probes 1 and 3 revealed a very low response of the typical
absorption for rhodamine compounds in the range from 500 to 600 nm
and so very low molar extinction coefficients (ε = 603 dm3·mol–1·cm–1 for 1 and 3260 dm3·mol–1·cm–1 for probe 3, determined in an EtOH at
560 nm). On the other hand, permanently opened rhodamine moiety of
probes 2 and 4 showed evident absorption
in the range from 500 to 600 nm and thus a higher molar extinction
coefficient (ε = 91,600 and 51,600 dm3·mol–1·cm–1, respectively).
Table 1
Fluorescent Properties of New Probes
ex (nm)
em (nm)
QYa (%)
entry
DMSO
H2O
EtOH
MeOH
DMSO
H2O
EtOH
MeOH
DMSO
H2O
EtOH
MeOH
1
567
555
567
563
590
578
580
583
7.7
1.3
4. 0
11.9
324
326
491
462
2
567
572
568
563
592
597
582
585
1.2
8.0
2.5
10.8
3
567
558
567
563
590
591
580
583
3.1
0.5
4.8
16.2
332
332
489
462
4
567
572
566
563
592
597
583
585
1.6
1.4
1.6
1.8
QY, fluorescence quantum yield determined
at 520 nm with Rhodamine B in DMSO as a reference, according to the
previously published protocol.[22] In the
case of dual emission, the yield is determined for the higher wavelength.
QY, fluorescence quantum yield determined
at 520 nm with Rhodamine B in DMSO as a reference, according to the
previously published protocol.[22] In the
case of dual emission, the yield is determined for the higher wavelength.The fluorescence measurements
exhibited the typical rhodamine excitation
and emission maxima (Table ), slightly different according to the used solvent (λex = 555–572 nm; λem = 578–597
nm). Interestingly, compounds 1 and 3 exhibited
evident excitation/emission maxima at 324–332/462–491
nm, respectively, besides typical rhodamine excitation and emission
maxima. Further, we assessed the quantum yields of probes 1–4 in four different solvents (DMSO, H2O, EtOH, and MeOH). This measurement revealed a strong solvent dependence,
as shown in Table . Very low quantum yields might be explained by the fluorescence
quenching produced by the aggregates of the zwitterion and the cationic
molecular forms of rhodamine moiety.[21]
The pH Dependence of Probes 1–4
To investigate the influence of the different pH on the
spectra of probes 1–4, we measured the spectroscopic
properties in Britton–Robinson buffer (0.05 M) with various
pH values (Figure ). Not surprisingly, all probes showed a pH dependence of fluorescence
intensities at pH 2–4, as shown in Figure a. While probes 1 and 3 lost almost all emission at around pH 4, their N-methylated analogous 2 and 4 expectedly
kept the fluorescence at a significant level above this pH. Further,
the pH-dependent variation of absorbance in the rhodamine typical
region (around 570 nm) revealed the evident differences between probes 1/3 and 2/4 (Figure and Figures S17 to S20). While the absorbance of 1 and 3 remains very low in the whole range of
studied pH, probes 2 and 4 exhibit appreciably
increased absorbance in this pH region due to one ring being permanently
opened. Moreover, only a slight change of absorbance at 565 nm between
acidic and basic pH is observable in all probes (Figure and Figures S17 to S20). These results point to the fact that the pH-mediated
opening of the lactame ring in all probes in acidic pH is not so efficient
for all the probes, and the equilibrium is shifted to the closed form.
This can be caused by stacking, micelle formation, mutual intra/intermolecular
interaction, etc.
Figure 2
(a) pH-dependent variation of fluorescent intensity at
an emission
wavelength of 583 nm (excitation at 563 nm). (b) pH-dependent variation
of absorbance at 565 nm of 1 and 3 (c = 10 μM) measured in Britton–Robinson buffer
(0.05 M) with various pH values. (c) pH-dependent variation of absorbance
at 565 nm of 2 and 4 (c = 10 μM) measured in Britton–Robinson buffer (0.05
M) with various pH values.
(a) pH-dependent variation of fluorescent intensity at
an emission
wavelength of 583 nm (excitation at 563 nm). (b) pH-dependent variation
of absorbance at 565 nm of 1 and 3 (c = 10 μM) measured in Britton–Robinson buffer
(0.05 M) with various pH values. (c) pH-dependent variation of absorbance
at 565 nm of 2 and 4 (c = 10 μM) measured in Britton–Robinson buffer (0.05
M) with various pH values.Although both compounds 1 and 3 exhibited
two fluorescence excitation and emission maxima (see Table ), only probe 3 showed a different pH dependence upon a used excitation wavelength
(Figure ). As depicted
in Figure a, when
the excitation wavelength of probe 3 was 563 nm, the
maximum fluorescence intensity was reached at pH 2. The emission was
still significant at pH 3 but disappeared at pH 4. In higher pH, the
system is turned off. On the contrary, probe 3 upon excitation
at 325 nm showed that the intensity of the fluorescence peak reached
maxima at pH 12. In a range of pH 4–12, the fluorescence intensity
is tunable by pH change (Figure b). Probe 1 exhibited insignificant changes
in fluorescence intensity at excitation at 325 nm.
Figure 3
Fluorescence intensity
dependence of 3 (c = 10 μM) measured
in Britton–Robinson buffer (0.05
M) with various pH values at (a) λex = 563 and (b)
325 nm.
Fluorescence intensity
dependence of 3 (c = 10 μM) measured
in Britton–Robinson buffer (0.05
M) with various pH values at (a) λex = 563 and (b)
325 nm.
Absorption and Fluorescence
Titrations of 1–4 with Metal Ions
We further investigated the change
of spectral properties of compounds 1–4 after the addition of various cations (Figures to 7). The cations were studied as chlorides
or nitrates of Sn(IV), Sn(II), Fe(II), Fe(III), Ca(II), Cd(II), Al(III),
Ba(II), Ce(III), K(I), Na(I), Li(I), Hg(II), Zn(II), Cu(I), Cu(II),
Mg(II), Ag(I), Pb(II), Cr(III), and Cs(I) ions in a concentration
of 50 μM with application of the probes in a concentration of
10 μM.
Figure 4
(a) Fluorescence emission and (b) UV–vis spectra
of 1 (10 μM) in the presence of various metal ions
(50
μM) in MeOH/H2O (2:1, v/v).
Figure 7
Job plots
for probes (a) 1 and (b) 3 (in
a MeOH/H2O solution (2:1, v/v)) with a total concentration
of rhodamine derivatives and Sn(IV) 10–6 M. Absorbance
was measured at 560 nm.
(a) Fluorescence emission and (b) UV–vis spectra
of 1 (10 μM) in the presence of various metal ions
(50
μM) in MeOH/H2O (2:1, v/v).(a) Fluorescence
emission and (b) UV–vis spectra of 3 (10 μM)
in the presence of various metal ions (50
μM) in MeOH/H2O (2:1, v/v).Selectivity
of (a) probes 1 (10 μM) and (b) 3 (10
μM) toward various metal ions (50 μM) in
MeOH/H2O (2:1, v/v).Job plots
for probes (a) 1 and (b) 3 (in
a MeOH/H2O solution (2:1, v/v)) with a total concentration
of rhodamine derivatives and Sn(IV) 10–6 M. Absorbance
was measured at 560 nm.The fluorescence spectra
of 1 and 3 displayed
the very low intensity of characteristic emission band in the range
from 500 to 600 nm (in MeOH/H2O (2:1, v/v)). The addition
of various metal ions caused a significant increase in the fluorescence
intensity with an emission maximum at around 583 nm (Figures a and 5a). This observation supported the formation of the complex between 1 or 3 and the ions. The highest emission was
observed for Sn(IV) ions for which the fluorescence increased approximately
seven times in the case of 1 and thirteen times in the
case of 3. The selectivity of 1 and 3 toward tetravalent tin compared to other ions is also obvious
from the fluorescence response depicted in Figure . The addition of various metal ions to the
solution of probes 2 or 4 displayed almost
no change in the fluorescence intensity, which indicated clear unsuitability
of these compounds as chemosensors for ion determination.
Figure 5
(a) Fluorescence
emission and (b) UV–vis spectra of 3 (10 μM)
in the presence of various metal ions (50
μM) in MeOH/H2O (2:1, v/v).
Figure 6
Selectivity
of (a) probes 1 (10 μM) and (b) 3 (10
μM) toward various metal ions (50 μM) in
MeOH/H2O (2:1, v/v).
Subsequently,
the UV–vis absorption spectra measured for
intact compounds 1 and 3 also revealed a
very low intensity of the typical absorption for rhodamine compounds
in the range from 500 to 600 nm (Figures b and 5b). Upon addition
of metal ions, the absorption band at 560 nm, indicating the rhodamine
spirolactam ring opening, appeared. Its intensity is dependent on
the type of metal ions. The highest intensity of absorbance came up
upon the addition of Sn(IV), which was accompanied by a remarkable
color change (from colorless to pink) and the increasing molar extinction
coefficients (ε = 10,758 dm3·mol–1·cm–1 for 1 and 14,560 dm3·mol–1·cm–1 for 3).A comparison of the fluorescence after the addition
of the individual
ions is depicted in Figure . The most significant increase of the fluorescence was observed
after the addition of Sn(IV) ions. Appreciable fluorescence enhancement
was also observed after the addition of Al(III), Sn(II), Fe(II), and
Fe(III) ions. On the other hand, the fluorescence even decreased when
Cs(I) ions were added in the case of probe 3.Further,
to investigate the interaction between our probes and
Sn(IV), the fluorescent titration experiments were performed (Figures S21 and S22). The Job plot shows 1:1
stoichiometry between probe 1 and Sn(IV), which indicates
the formation of a 1:1 complex (Figure a). On the other hand, the stoichiometry of 3 and Sn(IV) indicates the formation of a 3:2 complex (Figure b). Moreover, calculations
for the binding constant using fluorescence titration data were performed.
The association constant for the formation of rhodamine complexes
were evaluated using the Benesi–Hildebrand plot,[23,24]where I represents the emission
intensity at a certain concentration of the metal ion added, Imax represents the maximum emission intensity
in the presence of added metal ions, and I0 represents the emission intensity of free probe at 582 nm (λexc = 563 nm). The association constant (K) for binding of Sn4+ ions by 1 and 3 was estimated from the emission titration experiments as
1.57 × 104 and 1.63 × 104 M–1, respectively (Figures S23 and S24).
The detection limit of probes 1 and 3 for
the Sn(IV) determination was calculated to be 2.78 and 2.56 μM,
respectively (Figure S25 and S26), which
is comparable with the best-published results (0.9 μM).[25]Further, we measured the time course changes
in the fluorescence
intensity of the complexation between the 1 or 3 probe and Sn(IV). Our results revealed that, while the fluorescence
intensity for compound 1 remarkably increased for the
first 25 min, the fluorescence intensity for compound 3 was practically constant from the beginning (Figure ). According to these results, compound 3 is the final one suitable for tin ion sensing.
Figure 8
Time courses
of fluorescence intensity of 1 and 3 upon
the addition of Sn(IV) in MeOH/H2O (2:1,
v/v) (λext = 563 nm).
Time courses
of fluorescence intensity of 1 and 3 upon
the addition of Sn(IV) in MeOH/H2O (2:1,
v/v) (λext = 563 nm).From the molecular structure and spectral results of sensors 1 and 3, a possible sensing mechanism was postulated
(Figures and 10). This sensing mechanism based on the Sn(IV)-triggered
spirolactam ring-opening process comprises the two carbonyl O atoms
as the most likely binding sites for Sn(IV) on compound 1 (Figure ). On the
other hand, the Job plot indicated the 3:2 coordination mode between
probe 3 and Sn(IV). These results suggest the proposed
interaction mode of 3 and Sn(IV), as shown in Figure , where Sn(IV)
is coordinated with the three carbonyl oxygen atoms of 3.
Figure 9
Proposed complexation of Sn(IV) ions and probe 1.
Figure 10
Proposed complexation of the Sn(IV) ions and probe 3.
Proposed complexation of Sn(IV) ions and probe 1.Proposed complexation of the Sn(IV) ions and probe 3.As it follows from Figure , the variation of the fluorescence
intensity with pH altering
after excitation at 325 nm can be used for the construction of a light
dimmer with emission intensity operated by pH in the range of 4–12.
Moreover, when pH decreases under 4, the excitation at 563 nm will
afford emission at 590 nm. This fact can be used for the detection/alarm
activation of pH lower than 4. Derivative 3 can serve
as the molecular electronics device imitating a more complicated classical
electronics device depicted in Figure .
Figure 11
Scheme of a molecular dimmer operated by pH
with the too low pH
alarm.
Scheme of a molecular dimmer operated by pH
with the too low pH
alarm.The dimmer itself is operated
by two inputs IpH and I325. The first belongs
to a circuit constructed by, e.g., a glass electrode, the potential
of which is dependent on pH. An appropriate current of variable intensity
generated by a combination of the glass electrode and resistor RpH comes into the operational amplifier OA1. The second input I325 is constant
and forms an analog of an excitation wavelength of 325 nm used in
the case of a molecular device.The amplifier OA2 has the input I563 of the constant value
imitating the excitation of 563 nm
when the molecular device is used. The second input is the variable
current coming from the pH electrode. The combination of resistors R1 to R3 allows the
throughput of the OA2 only if the intensity of the current
input corresponds to pH < 4. In such a case, this current will
light on the diode emitting at 590 nm.
Conclusions
We
have synthesized four fluorescent probes bearing two Rhodamine
B moieties in their structure. Two of them, probes 1 and 3, exhibited increased absorbance and evident fluorescence
enhancement upon the addition of Sn(IV) ions with a micromolar detection
limit that is comparable with the best-published results. Moreover,
probe 3 showed pH dependence dual excitation as well
as emission maxima (563 and 325 nm) with inverse sensitivity under
the different pH values. This property was used for the construction
of a molecular dimmer, enabling to tune the light intensity by the
change of pH with a detector of too low pH. This system can be used
in molecular electronics as a pH guard with an alarm signaling potential
damage caused by high acidity.
Experimental Section
Materials and Methods
Solvents and chemicals were purchased
from Sigma-Aldrich (St. Louis, Missouri, USA) or Fluorochem (UK).
The polystyrene resins were purchased from Aapptec (Canada). The synthesis
was performed on domino blocks in disposable polypropylene reaction
vessels obtained from Torviq (Niles, MI).All reactions were
carried out at room temperature (21 °C) unless stated otherwise.
Resin slurry was washed with the appropriate solvent (10 mL per 1
g) by shaking for 1 min. All intermediates were characterized by the
LC–MS analysis. For this purpose, a sample of the polymer-bound
compound (∼5 mg) was treated with 50% trifluoroacetic acid
(TFA) in dichloromethane (DCM) for 30 min. Residual solvents were
evaporated by a stream of nitrogen and residuum extracted into 1 mL
of MeOH.The LC–MS analyses were carried out on the UHPLC–MS
system (Waters). This system consists of UHPLC chromatograph ACQUITY
with a photodiode array detector and single quadrupole mass spectrometer
and uses a XSelect C18 column (2.1 × 50 mm) at 30 °C and
a flow rate of 600 μL/min. The mobile phase was (A) 10 mM ammonium
acetate in HPLC grade water and (B) HPLC grade acetonitrile. A gradient
was formed from 10% A to 80% of B in 2.5 min; kept for 1.5 min. The
column was reequilibrated with a 10% solution of B for 1 min. The
ESI source was operated at a discharge current of 5 μA, a vaporizer
temperature of 350 °C, and a capillary temperature of 200 °C.Purification was carried out on a C18 reverse-phase column (YMC,
20 × 100 mm for 5 μm particles). The gradient was formed
from 10 mM aqueous ammonium acetate and acetonitrile at a flow rate
of 15 mL/min. The purity of all compounds after HPLC purification
is >95%.NMR 1H/13C spectra were recorded
on a JEOL
ECA400II (400 MHz) spectrometer at magnetic field strengths of 9.39
T (with operating frequencies of 399.78 MHz for 1H and
100.53 MHz for 13C). Chemical shifts (δ) are reported
in parts per million (ppm), and coupling constants (J) are reported in Hertz (Hz). NMR spectra were recorded at room temperature
(21 °C) and were referenced to the residual signals of DMSO-d6. The residual acetate salts exhibited a signal
at 1.7–1.9 ppm (1H) and two signals at 173 and 23
ppm (13C).HRMS analysis was performed on an LC chromatograph
(Dionex UltiMate
3000, Thermo Fisher Scientific, MA, USA) with an Exactive Plus Orbitrap
high-resolution mass spectrometer (Thermo Fisher Scientific, MA, USA)
operating in positive scan mode in the range of 1000–1500 m/z. Electrospray was used as a source
of ionization. Samples were diluted to a final concentration of 0.1
mg/mL in a solution of water and acetonitrile (50:50, v/v). The samples
were injected into the mass spectrometer following HPLC separation
on a Phenomenex Gemini column (C18, 50 × 2 mm, 3 μm particle)
using an isocratic mobile phase of 0.01 M MeCN/ammonium acetate (80/20)
at a flow rate of 0.3 mL/min.Derivatives 1 and 2 were
synthesized according to the procedure depicted in Scheme . Derivatives 3 and 4 were synthesized according to the procedure depicted
in Scheme .
Synthesis
of Linker 1 (Acylation with PEG)
The Wang
resin (loading 1.0 mmol/g, ∼1 g) was washed three times with
DCM. A solution consisting of 1-(9H-fluoren-9-yl)-3-oxo-2,7,10-trioxa-4-azadodecan-12-oic
acid (2 mmol), HOBt (2 mmol), DMAP (0.5 mmol), and DIC (2 mmol) in
DMF/DCM (1:1, v/v, 10 mL) was added to the resin. The resin slurry
was shaken at rt for 16 h. The resin was washed three times with DMF
and three times with DCM. Next, the Fmoc protecting group was removed
by exposure to 50% piperidine in DMF (v/v, 10 mL) for 15 min, and
then, the resin was washed three times with DMF and three times with
DCM.
Reaction with 4,6-Dichloro-5-nitropyrimidines (Resin 2)
Resin 1 (∼1 g) was washed three times
with dry DMF and reacted with a solution consisting of 4,6-dichloro-5-nitropyrimidines
(5 mmol) and DIEA (5 mmol) in dry DMF (10 mL) at rt for 16 h. The
resin was washed five times with DMF and three times with DCM.
Reaction
with p-Phenylenediamine (Resin 3)
Resin 2 (∼0.5 g) was washed
three times with dry DMF and reacted with a solution consisting of p-phenylenediamine (2.5 mmol) and DIEA (2.5 mmol) in dry
DMF (5 mL) at rt for 16 h. The resin was washed three times with DMF
and three times with DCM.
Acylation with Rhodamine B (Resins 4, 6, 7, 9, 12, and 13)
Resins 3, 5, 8, 10, and 11 (∼0.5
g) were each washed three
times with DCM. A solution consisting of Rhodamine B (1.5 mmol), HOBt
(1.5 mmol), and DIC (1.5 mmol) in DMF/DCM (1:1, v/v, 5 mL) was added
to the resin. The resin slurry was shaken at rt for 16 h. The resin
was washed eight times with DMF and eight times with DCM.
Sulfonylation
with 4-Nitrobenzenesulfonyl Chloride, Fukuyama–Mitsunobu
Reaction with Methanol and Removal of the Nos Group (Resin 7)
Resin 3 (∼250 mg) was washed three
times with DCM and three times with DMF. A solution consisting of
4-nitrobenzenesulfonyl chloride (0.75 mmol) and 2,6-lutidine (0.825
mmol) in DCM (2.5 mL) was added to the resin, and the reaction slurry
was shaken at rt for 16 h. The resin was washed five times with DCM.The resin was washed three times with anhydrous THF. A solution
consisting of alcohol (0.625 mmol) and PPh3 (0.625 mmol)
in anhydrous THF (2.5 mL) was added. The resin was stored in a freezer
for 30 min followed by reaction with DIAD (0.625 mmol) at rt for 1
h. The resin was washed three times with THF and five times with DCM.The resin was washed three times with DMF and was reacted with
a solution consisting of 2-mercaptoethanol (0.6 mmol) and 0.2 M DBU
(0.2 mmol) in DMF (2.5 mL) for 5 min.
Cleavage from Resin with
TFA (Compounds 1–4)
Resins 6, 9, 12, and 13 (∼250
mg) were each treated with 2 mL
of a solution consisting of TFA/DCM (1:1, v/v) for 1 h. The cleavage
cocktail was collected, and the resin was washed three times with
50% TFA in DCM. The combined extracts were evaporated by a stream
of nitrogen, and the crude products were purified by reversed-phase
HPLC.
Authors: Songzi Kou; Han Na Lee; Danny van Noort; K M K Swamy; So Hyun Kim; Jung Hyun Soh; Kang-Mu Lee; Seong-Won Nam; Juyoung Yoon; Sungsu Park Journal: Angew Chem Int Ed Engl Date: 2008 Impact factor: 15.336