Literature DB >> 3236047

Computer-aided molecular modelling: research study or research tool?

A Dearing1.   

Abstract

Developments in computational methods and equipment have produced a new type of research chemist, who prefers to calculate properties as well as measure them, either to gain a better understanding of microscopic molecular behaviour per se, or to guide a broader scientific study using a so-called 'rational' approach. While there is good reason to believe that significant results can be obtained this way, it is clear that only some of the 'tools of the trade' are sufficiently robust to present to those who are not experts in the field. This paper discusses the underlying basis for molecular modelling techniques, describing their history, state of maturity and prospects for future development. The intention is to outline the scope that these play in an industrial research environment, and to examine how they can successfully be incorporated as routine research tools. Computer-based molecular modelling is not a unique discipline. Some comparisons are drawn between it and other computer-based techniques that have reached a greater degree of maturity, in order to highlight the points made.

Mesh:

Year:  1988        PMID: 3236047     DOI: 10.1007/bf01531992

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  10 in total

1.  Computer-assisted design of complex organic syntheses.

Authors:  E J Corey; W T Wipke
Journal:  Science       Date:  1969-10-10       Impact factor: 47.728

2.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

3.  Dynamics of folded proteins.

Authors:  J A McCammon; B R Gelin; M Karplus
Journal:  Nature       Date:  1977-06-16       Impact factor: 49.962

4.  Molecular dynamics of native protein. I. Computer simulation of trajectories.

Authors:  M Levitt
Journal:  J Mol Biol       Date:  1983-08-15       Impact factor: 5.469

5.  Side-chain torsional potentials: effect of dipeptide, protein, and solvent environment.

Authors:  B R Gelin; M Karplus
Journal:  Biochemistry       Date:  1979-04-03       Impact factor: 3.162

6.  Studies of nucleotide conformations and interactions. The relative stabilities of double-helical B-DNA sequence isomers.

Authors:  P A Kollman; P K Weiner; A Dearing
Journal:  Biopolymers       Date:  1981-12       Impact factor: 2.505

7.  Molecular mechanical studies of proflavine and acridine orange intercalation.

Authors:  A Dearing; P Weiner; P A Kollman
Journal:  Nucleic Acids Res       Date:  1981-03-25       Impact factor: 16.971

8.  Structure, energetics and dynamics of ligand binding to dihydrofolate reductase.

Authors:  P Dauber; D J Osguthorpe; A T Hagler
Journal:  Biochem Soc Trans       Date:  1982-10       Impact factor: 5.407

9.  Computer simulation of the dynamics of hydrated protein crystals and its comparison with x-ray data.

Authors:  W F van Gunsteren; H J Berendsen; J Hermans; W G Hol; J P Postma
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

10.  Molecular model-building by computer.

Authors:  C Levinthal
Journal:  Sci Am       Date:  1966-06       Impact factor: 2.142

  10 in total
  2 in total

Review 1.  Symposium overview. The Shell Conference on Computer-Aided Molecular Modelling.

Authors:  G R Hays; D P de Bruijn
Journal:  J Comput Aided Mol Des       Date:  1988-10       Impact factor: 3.686

2.  On the structure of bacteriochlorophyll molecular aggregates in the chlorosomes of green bacteria. A molecular modelling study.

Authors:  A R Holzwarth; K Schaffner
Journal:  Photosynth Res       Date:  1994-07       Impact factor: 3.573

  2 in total

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