Literature DB >> 32355476

Molecular Basis of ABO Variants Including Identification of 16 Novel ABO Subgroup Alleles in Chinese Han Population.

Yan-Ling Ying1,2,3, Xiao-Zhen Hong2,3, Xian-Guo Xu2,3, Shu Chen2,3, Ji He2,3, Fa-Ming Zhu2,3, Xin-You Xie1.   

Abstract

INTRODUCTION: The characteristic of ABO blood subgroup is crucial for elucidating the mechanisms of such variant phenotypes and offering useful information in blood transfusion.
METHODS: In total, 211 ABO variants including part of available family members were investigated in this study. The phenotypes of these individuals were typed with serologic methods. The full coding regions of ABO gene and the erythroid cell-specific regulatory elements in intron 1 of them were amplified with polymerase chain reaction and then directly sequenced. The novel alleles were confirmed by cloning and sequencing. Phylogenetic tree was made using CLUSTAL W software. 3D structural analyses of the glycosyltransferases (GTs) with some typical mutations were performed by PyMOL software.
RESULTS: Forty-eight distinctly rare ABO alleles were identified in 211 Chinese variant individuals, including 16 novel ABO alleles. All of the alleles were categorized as 5 groups: 16 ABO*A alleles, 23 ABO*B alleles, 4 ABO*BA alleles, 4 ABO*cisAB alleles, and 1 ABO*O alleles. ABO*A2.08 and ABO*BA.02 were the relatively predominant A and B subgroup alleles, respectively. According to the phylogenetic tree, 28 alleles (5 common alleles and 23 alleles identified in our laboratory) were classified into 3 major allelic lineages. The structural analysis of 3D homology modeling predicted reduced protein stability of the mutant GTs and may explain the reduced ABO antigen expression.
CONCLUSIONS: The molecular basis of ABO variants was analyzed, and 16 novel ABO alleles were identified. The results extended the information of ABO variants and provided a basis for better transfusion strategies and helped to improve blood transfusion safety.
Copyright © 2019 by S. Karger AG, Basel.

Entities:  

Keywords:  ABO variants; Molecular basis; Novel ABO allele; Sequence-based typing

Year:  2019        PMID: 32355476      PMCID: PMC7184853          DOI: 10.1159/000501862

Source DB:  PubMed          Journal:  Transfus Med Hemother        ISSN: 1660-3796            Impact factor:   3.747


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6.  Nomenclature for red blood cell blood group alleles.

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7.  A novel mutation +5904 C>T of RUNX1 site in the erythroid cell-specific regulatory element decreases the ABO antigen expression in Chinese population.

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9.  New and unusual O alleles at the ABO locus are implicated in unexpected blood group phenotypes.

Authors:  Bahram Hosseini-Maaf; Nidal M Irshaid; Asa Hellberg; Thomas Wagner; Cyril Levene; Hein Hustinx; Rudi Steffensen; M Alan Chester; Martin L Olsson
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10.  BGMUT: NCBI dbRBC database of allelic variations of genes encoding antigens of blood group systems.

Authors:  Santosh Kumar Patnaik; Wolfgang Helmberg; Olga O Blumenfeld
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2.  Analysis of the Genomic Sequence of ABO Allele Using Next-Generation Sequencing Method.

Authors:  Yanmin He; Xiaozhen Hong; Jingjing Zhang; Ji He; Faming Zhu; He Huang
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3.  The genomic landscape of blood groups in Indigenous Australians in remote communities.

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  3 in total

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