| Literature DB >> 32352215 |
Niels van den Berg1,2, Mar Rodríguez-Girondo3, Kees Mandemakers4, Angelique A P O Janssens2, Marian Beekman1, P Eline Slagboom1,5.
Abstract
Loci associated with longevity are likely to harbor genes coding for key players of molecular pathways involved in a lifelong decreased mortality and decreased/compressed morbidity. However, identifying such loci is challenging. One of the most plausible reasons is the uncertainty in defining long-lived cases with the heritable longevity trait among long-living phenocopies. To avoid phenocopies, family selection scores have been constructed, but these have not yet been adopted as state of the art in longevity research. Here, we aim to identify individuals with the heritable longevity trait by using current insights and a novel family score based on these insights. We use a unique dataset connecting living study participants to their deceased ancestors covering 37,825 persons from 1,326 five-generational families, living between 1788 and 2019. Our main finding suggests that longevity is transmitted for at least two subsequent generations only when at least 20% of all relatives are long-lived. This proves the importance of family data to avoid phenocopies in genetic studies.Entities:
Keywords: aging; family tree; genetics; inheritance; longevity
Mesh:
Year: 2020 PMID: 32352215 PMCID: PMC7294789 DOI: 10.1111/acel.13139
Source DB: PubMed Journal: Aging Cell ISSN: 1474-9718 Impact factor: 9.304
Overview study sample for groups in all generations based on the proband and F3 perspective
| Role | Number | Deceased (%) | Alive (%) | Female (%) | Range birth cohort | Mean age (sd) | Median age (sd) | missing_age (%) |
|---|---|---|---|---|---|---|---|---|
| Cases (original approach) | ||||||||
| F1 IPs | 884 | 884 (100) | 0 (0) | 422 (50) | 1860–1875 | 85.79 (4.59) | 84.99 (4.95) | 0 (0) |
| F2 descendants | 4,916 | 4,405 (90) | 11 (1) | 2,435 (50) | 1879–1941 | 63.04 (31.11) | 75.51 (17.72) | 500 (9) |
| F2 spouses | 3,899 | 1,500 (38) | 16 (1) | 1504 (38) | 1873–1934 | 76.2 (15.09) | 78.78 (12.83) | 2,383 (61) |
| F3 descendants | 9,910 | 4,869 (49) | 4,146 (42) | 4,733 (48) | 1901–1973 | 70.35 (19.54) | 74.77 (11.38) | 895 (9) |
| F3 spouses | 3,431 | 1,289 (38) | 792 (23) | 1963 (57) | 1900–1959 | 77.14 (11.31) | 79.25 (10.1) | 1,350 (39) |
| F4 descendants | 9,001 | 746 (8) | 7,172 (80) | 3,937 (44) | 1922–1995 | 57.7 (10.68) | 58.21 (9) | 1,083 (12) |
| Controls (original approach) | ||||||||
| F1 IPs | 442 | 442 (100) | 0 (0) | 214 (48) | 1860–1875 | 51.71 (5.71) | 52.88 (6.21) | 0 (0) |
| F2 descendants | 2,488 | 2,202 (89) | 1 (<1) | 1,217 (49) | 1881–1925 | 58.17 (32.49) | 71.72 (21.37) | 285 (11) |
| F2 spouses | 1,877 | 690 (37) | 7 (<1) | 734 (39) | 1875–1935 | 76.02 (14.77) | 78.34 (13.76) | 1,180 (63) |
| F3 descendants | 4,761 | 2,540 (53) | 1813 (38) | 2,265 (48) | 1904–1966 | 69.39 (20.38) | 74.49 (11.36) | 408 (9) |
| F3 spouses | 1,778 | 721 (41) | 376 (21) | 972 (55) | 1893–1965 | 76.54 (11.5) | 78.66 (10.47) | 681 (38) |
| F4 descendants | 4,710 | 387 (8) | 3,744 (80) | 2099 (45) | 1871–1992 | 57.72 (11.17) | 58.37 (9.35) | 579 (12) |
| F3 perspective (combined approach) | ||||||||
| F3 descendants | 14,671 | 7,409 (51) | 5,959 (41) | 6,998 (48) | 1901–1973 | 70.03 (19.82) | 74.68 (11.38) | 1,303 (8) |
| F3 spouses | 5,209 | 2,010 (38) | 1,168 (22) | 2,935 (55) | 1893–1965 | 76.93 (11.38) | 79.07 (10.24) | 2,031 (40) |
| F2 parents | 9,728 | 6,139 (63) | 23 (1) | 4,137 (43) | 1873–1935 | 76.8 (13.4) | 78.9 (12.31) | 3,566 (36) |
| F2 aunts and uncles | 7,036 | 6,382 (91) | 10 (1) | 3,456 (49) | 1879–1941 | 61.81 (31.47) | 74.4 (18.67) | 644 (8) |
| F1 grandparents | 1,181 | 1,181 (100) | 0 (0) | 560 (47) | 1860–1875 | 74.88 (16.6) | 81.94 (9.72) | 0 (0) |
The Cases and Controls rows provide an overview of the groups of persons from the original case/control perspective of the data, described as the first study phase (original approach). The F3 perspective rows provide an overview of the groups of persons from the perspective of F3 descendants, described as the second study phase (combined approach). Mean and missing age refer to an unknown age at death or an unknown age at last observation. For the F0 and F1 groups, we assume everyone is dead because the birth cohorts date back further than 120 years. From the F2 generations, we requested Personal Records Data indicating if a person was still alive or not and if not, what the date of death was. The F1 IPs are the focal persons in the pedigrees as they are selected to be 80 years or older (cases) or to have died between 40 and 59 years (controls).
Indicates that the group is excluded for this study, and sd refers to standard deviation. Please note that the F3 perspective (second study phase, combined approach) is used to identify a new group of cases and controls based on the LRC score and are referred to as family cases and family controls.
Figure 1Pedigree overview of the data structure. This figure illustrates the two approaches: (1) the original approach and (2) the combined approach. The original approach refers to the case and control group based on the F1 IPs where cases died at 80 years or older and controls died between 40 and 59 years (panel a). Panel b shows a pedigree of the data from the perspective of F3 children (combined approach). The combined approach refers to the dataset where we combined the cases and controls from the original approach and constructed a new case and control group in the F3 descendants. To this end, F3 descendants with ≥30% long‐lived ancestors were labeled as family cases and those without long‐lived ancestors as family controls. F3 spouses were left out of this figure, but this group was used to confirm a genetic enrichment in the F3 descendants
Standardized mortality ratios for original case and control group individuals
| Role | Case group SMRs | Number ( | Control group SMRs | Number ( | Adjustment for left truncation |
|---|---|---|---|---|---|
| F1 IPs | 1.06 (0.99–1.13) | 884 | NA | NA | 80 years |
| F2 descendants | 0.87 (0.84–0.89) | 4,416 | 1.01 (0.96–1.05) | 2,203 | No adjustment |
| F2 spouses | 0.89 (0.85–0.94) | 1,516 | 0.9 (0.83–0.97) | 697 | 20 years |
| F3 descendants | 0.86 (0.84–0.89) | 9,015 | 0.96 (0.93–1.00) | 4,353 | No adjustment |
| F3 spouses | 1.00 (0.95–1.05) | 2,081 | 1.07 (0.99–1.15) | 1,097 | 20 years |
Original cases (F1 IPs) died at 80 years or older, and original controls (F1 IPs) died between 50 and 69 years. If persons could not die before a specific age due to direct or indirect selection, due to, for example, that all persons in a group were selected to have a child, an adjustment for right truncation was applied so that a fair comparison could be made with their birth cohort members. An SMR for F1 control IPs could not be estimated due to a combination of left truncation and right truncation in the data. The life tables can only be adjusted for right or left truncation, but not a combination between the two.
Figure 2LRC score in mutually exclusive F3 descendant groups. The figure shows standardized mortality ratios for all F3 descendants without missing age (at death or last observation) information. Please note that the group sizes are smaller than mentioned in the text as those in the text represent the full group sizes, including the persons with missing age information. The F3 descendants are grouped into mutually exclusive groups based on the LRC score. The LRC score represents the family approach as illustrated in Figure 1b. The dark red color of group 1 represents F3 descendants without any long‐lived (top 10%) ancestors and is denoted as family controls. The light red represents F3 descendants who had more than 0 and less than 20% long‐lived ancestors. The light blue colors represent the F3 descendants with 20% or more long‐lived ancestors. The dark blue color represents our cutoff point for the family case definition. Hence, all F3 descendants with 30% or more long‐lived ancestors were considered family cases. The beige color of group 9 shows that this bar represents all F3 ancestors with more than 70% long‐lived ancestors as their sample size was very low, we grouped them into one group
Figure 3Survival differences between family‐based cases and their spouses. This figure shows the survival curve for the difference in survival between the F3 family cases and controls. The figure is connected to Table 3a which shows the hazard ratios corresponding to the difference between the two curves. Blue color represents the cases, and red color represents the controls
Mortality difference between family cases and controls and their spouses
| A | B | |||||
|---|---|---|---|---|---|---|
|
| HR (95% CI) |
|
| HR (95% CI) |
| |
| Family‐based case/control group | ||||||
| Control group (ref) | 3,714 (0.62) | 3,714 (0.50) | ||||
| Case group | 2,282 (0.38) | 0.75 (0.69–0.82) | 1.75e−10 | 2,282 (0.30) | 0.74 (0.68–0.80) | 4.08e−12 |
| Spouses of cases | 541 (0.07) | 0.94 (0.82–1.07) | 3.44e−01 | |||
| Spouses of controls | 937 (0.13) | 1.12 (1.00–1.25) | 4.07e−02 | |||
| Birth year | 5,996 (1933) | 0.99 (0.98–0.99) | 1.99e−05 | 7,474 (1932) | 0.98 (0.98–0.99) | 1.39e−12 |
| Sex | ||||||
| Males (ref) | 3,133 (0.52) | 3,364 (0.45) | ||||
| Females | 2,863 (0.48) | 0.56 (0.52–0.61) | <1.00e−15 | 4,110 (0.55) | 0.49 (0.46–0.53) | <1.00e−15 |
| Sibship size | ||||||
| Small—1–2 sibs (ref) | 1,531 (0.26) | |||||
| Medium—3–5 sibs | 1,770 (0.30) | 1.17 (1.04–1.32) | 8.51e−03 | |||
| Large—6–8 sibs | 927 (0.15) | 1.22 (1.04–1.43) | 1.21e−02 | |||
| Exceptional—9–15 sibs | 441 (0.07) | 1.36 (1.09–1.68) | 5.84e−03 | |||
| Single child—0 sibs | 1,327 (0.22) | 1.81 (1.62–2.02) | <1.00e−15 | |||
“A” corresponds to the CH curves of panel A of Figure 3. Means represent a mean for a continuous variable and a proportion for a categorical variable. When the p‐value was lower than 1.00e−15, we indicated the p‐value as <1.00*10–15. CI = confidence interval. F3 descendants with relatives who were still alive and had no last moment of observation ≥100 years were removed to assure an equal comparison between cases and controls. In “B”, the spouses of cases and controls are adjusted for the fact that they could not die before the birth of at least their first child (left truncation). We adjusted for this left truncation by entering the spouses of cases and controls in the model based on the first observed death in the groups (cases: 30 years and controls: 25 years). In model A, no adjustment for left truncation was necessary. In both models, we adjusted for right censoring by including a censoring indicator in the Cox model.
Standardized mortality ratio for different F3 descendant groups
| Group | SMR |
|
|---|---|---|
| Cases | ||
| F3 descendant with at least one long‐lived grandparent | 0.86 (95% CI = 0.83–0.89) | 4,986 |
| F3 descendant with at least one long‐lived parent | 0.84 (95% CI = 0.76–0.92) | 852 |
| F3 descendant with ≥30% long‐lived ancestors (LRC ≥ 30%) | 0.74 (95% CI = 0.70–0.78) | 2,304 |
| F3 descendant with ≥50% long‐lived ancestors (LRC ≥ 50%) | 0.62 (95% CI = 0.55–0.96) | 565 |
| Controls | ||
| F3 descendant with grandparent who died between 40 and 59 years | 0.96 (95% CI = 0.93–1.00) | 4,353 |
| F3 descendant with no long‐lived ancestors (LRC = 0) | 0.97 (95% CI = 0.93–1.01) | 3,782 |
Long‐lived is defined as belonging to the top 10% survivors of their birth cohort. Note that the group size (N) reflects only those with a known age at death as this was necessary to estimate a standardized mortality ratio.
Figure 4LRC score for F3 descendants with at least one long‐lived parent. This center of this doughnut figure shows all F3 descendants (N = 919) with at least one long‐lived (top 10%) parent, ignoring the rest of the ancestors. Thus, at least means that they could have more than 1 long‐lived ancestor but we actively selected for the presence of only 1 such ancestor. The edges of the doughnut illustrate the number and proportion of these 919 F3 descendants with at least one long‐lived parent who had (1) 30% or more long‐lived ancestors (LRC ≥ 0.30) and excess survival compared with the general population (SMR < 1), N = 335 (36%), (2) between 20% and 30% long‐lived ancestors (LRC ≥ 0.20 and <0.30) and excess survival compared with the general population (SMR < 1), N = 337 (37%), and (3) between 0% and 20% long‐lived ancestors (LRC > 0.20 and <0.20) and a similar survival pattern to the general population (SMR ~ 1), N = 247(27%)