Literature DB >> 3234347

Automatic classification of two-dimensional gel electrophoresis pictures by heuristic clustering analysis: a step toward machine learning.

R Appel1, D Hochstrasser, C Roch, M Funk, A F Muller, C Pellegrini.   

Abstract

The interpretation of two-dimensional gel electrophoresis (2-DGE) profiles can be facilitated by artificial intelligence and machine learning programs. We have incorporated into our 2-DGE computer analysis system (termed MELANIE-Medical Electrophoresis Analysis Interactive Expert system) a program which automatically classifies 2-DGE patterns using heuristic clustering analysis. This program is a step toward machine learning. In this publication, we describe the classification method and the preliminary results obtained with liver biopsy electrophoretograms. Heuristic clustering is also compared to other classification techniques.

Mesh:

Year:  1988        PMID: 3234347     DOI: 10.1002/elps.1150090307

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  8 in total

1.  Stage transitions in B-lymphocyte differentiation correlate with limited variations in nuclear proteins.

Authors:  T Rabilloud; J L Pennetier; U Hibner; P Vincens; P Tarroux; F Rougeon
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-01       Impact factor: 11.205

2.  Behavioural manipulation in a grasshopper harbouring hairworm: a proteomics approach.

Authors:  D G Biron; L Marché; F Ponton; H D Loxdale; N Galéotti; L Renault; C Joly; F Thomas
Journal:  Proc Biol Sci       Date:  2005-10-22       Impact factor: 5.349

3.  Diurnal Rhythmicity in the Pattern of mRNAs in the Leaves of Sinapis alba.

Authors:  F Cremer; J Dommes; C Van de Walle; G Bernier
Journal:  Plant Physiol       Date:  1990-12       Impact factor: 8.340

4.  The Whereabouts of 2D Gels in Quantitative Proteomics.

Authors:  Thierry Rabilloud; Cécile Lelong
Journal:  Methods Mol Biol       Date:  2021

5.  Multiple elevations of cytosolic-free Ca2+ in human neutrophils: initiation by adherence receptors of the integrin family.

Authors:  M E Jaconi; J M Theler; W Schlegel; R D Appel; S D Wright; P D Lew
Journal:  J Cell Biol       Date:  1991-03       Impact factor: 10.539

6.  Cluster and Principal Component Analysis of Human Glioblastoma Multiforme (GBM) Tumor Proteome.

Authors:  Mehdi Pooladi; Mostafa Rezaei-Tavirani; Mehrdad Hashemi; Saeed Hesami-Tackallou; Solmaz Khaghani-Razi-Abad; Afshin Moradi; Ali Reza Zali; Masoumeh Mousavi; Leila Firozi-Dalvand; Azadeh Rakhshan; Mona Zamanian Azodi
Journal:  Iran J Cancer Prev       Date:  2014

Review 7.  The state of the art in the analysis of two-dimensional gel electrophoresis images.

Authors:  Matthias Berth; Frank Michael Moser; Markus Kolbe; Jörg Bernhardt
Journal:  Appl Microbiol Biotechnol       Date:  2007-08-23       Impact factor: 4.813

8.  Two-dimensional gel electrophoresis (2D-GE) image analysis based on CellProfiler: Pseudomonas aeruginosa AG1 as model.

Authors:  Jose Arturo Molina-Mora; Diana Chinchilla-Montero; Carolina Castro-Peña; Fernando García
Journal:  Medicine (Baltimore)       Date:  2020-12-04       Impact factor: 1.817

  8 in total

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