Literature DB >> 32341849

Generative optical modeling of whole blood for detecting platelets in lens-free images.

Benjamin D Haeffele1, Christian Pick1, Ziduo Lin2, Evelien Mathieu1, Stuart C Ray1, René Vidal1.   

Abstract

In this paper, we consider the task of detecting platelets in images of diluted whole blood taken with a lens-free microscope. Despite having several advantages over traditional microscopes, lens-free imaging systems have the significant challenge that the resolution of the system is typically limited by the pixel dimensions of the image sensor. As a result of this limited resolution, detecting platelets is very difficult even by manual inspection of the images due to the fact that platelets occupy just a few pixels of the reconstructed image. To address this challenge, we develop an optical model of diluted whole blood to generate physically realistic simulated holograms suitable for training machine learning models in a supervised manner. We then use this model to train a convolutional neural network (CNN) for platelet detection and validate our approach by developing a novel optical configuration which allows collecting both lens-free and fluorescent microscopy images of the same field of view of diluted whole blood samples with fluorescently labeled platelets.
© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Year:  2020        PMID: 32341849      PMCID: PMC7173916          DOI: 10.1364/BOE.382280

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  8 in total

1.  High-throughput lens-free blood analysis on a chip.

Authors:  Sungkyu Seo; Serhan O Isikman; Ikbal Sencan; Onur Mudanyali; Ting-Wei Su; Waheb Bishara; Anthony Erlinger; Aydogan Ozcan
Journal:  Anal Chem       Date:  2010-06-01       Impact factor: 6.986

2.  Compact and light-weight automated semen analysis platform using lensfree on-chip microscopy.

Authors:  Ting-Wei Su; Anthony Erlinger; Derek Tseng; Aydogan Ozcan
Journal:  Anal Chem       Date:  2010-10-01       Impact factor: 6.986

3.  Ultra wide-field lens-free monitoring of cells on-chip.

Authors:  Aydogan Ozcan; Utkan Demirci
Journal:  Lab Chip       Date:  2007-11-01       Impact factor: 6.799

4.  Parametric-equation representation of biconcave erythrocytes.

Authors:  P W Kuchel; E D Fackerell
Journal:  Bull Math Biol       Date:  1999-03       Impact factor: 1.758

5.  Single scattering by red blood cells.

Authors:  M Hammer; D Schweitzer; B Michel; E Thamm; A Kolb
Journal:  Appl Opt       Date:  1998-11-01       Impact factor: 1.980

Review 6.  Lens-free imaging for biological applications.

Authors:  Sang Bok Kim; Hojae Bae; Kyo-In Koo; Mehmet R Dokmeci; Aydogan Ozcan; Ali Khademhosseini
Journal:  J Lab Autom       Date:  2012-02

7.  Cost-effective and rapid blood analysis on a cell-phone.

Authors:  Hongying Zhu; Ikbal Sencan; Justin Wong; Stoyan Dimitrov; Derek Tseng; Keita Nagashima; Aydogan Ozcan
Journal:  Lab Chip       Date:  2013-04-07       Impact factor: 6.799

8.  Lensfree holographic imaging for on-chip cytometry and diagnostics.

Authors:  Sungkyu Seo; Ting-Wei Su; Derek K Tseng; Anthony Erlinger; Aydogan Ozcan
Journal:  Lab Chip       Date:  2008-12-05       Impact factor: 6.799

  8 in total
  1 in total

1.  In Vitro Measurements of Shear-Mediated Platelet Adhesion Kinematics as Analyzed through Machine Learning.

Authors:  Jawaad Sheriff; Peineng Wang; Peng Zhang; Ziji Zhang; Yuefan Deng; Danny Bluestein
Journal:  Ann Biomed Eng       Date:  2021-05-10       Impact factor: 3.934

  1 in total

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