Literature DB >> 32338625

RNA secondary structured logic gates for profiling the microRNA cancer biomarkers.

Mahsa Yazdani1, Zohre Beiki2, Ali Jahanian3.   

Abstract

Deregulation of microRNAs expression is symptomatic of cancer disease and occurs before the awareness of cancer signs. Early detection of cancer disease can improve or drop the disease entirely. DNA computing is an emerging field of detecting microRNAs based on toehold-mediated strand displacement reactions, which is a more efficient method than the commonly used method like real-time PCR. Accuracy and cost of diagnostic applications are essential criteria that are achieved by using the DNA logic gates based on the DNA computing method. In this study, the authors proposed the multi-input liver cancer biosensor with the RNA secondary structure motifs as the computational module and two approaches are suggested.

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Year:  2020        PMID: 32338625      PMCID: PMC8676559          DOI: 10.1049/iet-nbt.2019.0150

Source DB:  PubMed          Journal:  IET Nanobiotechnol        ISSN: 1751-8741            Impact factor:   1.847


  21 in total

1.  Kinetics of DNA and RNA Hybridization in Serum and Serum-SDS.

Authors:  Elton Graugnard; Amber Cox; Jeunghoon Lee; Cheryl Jorcyk; Bernard Yurke; William L Hughes
Journal:  IEEE Trans Nanotechnol       Date:  2010-09-01       Impact factor: 2.570

2.  Rapid high-specificity microRNA detection using a two-stage isotachophoresis assay.

Authors:  Giancarlo Garcia-Schwarz; Juan G Santiago
Journal:  Angew Chem Int Ed Engl       Date:  2013-09-13       Impact factor: 15.336

3.  Control of DNA strand displacement kinetics using toehold exchange.

Authors:  David Yu Zhang; Erik Winfree
Journal:  J Am Chem Soc       Date:  2009-12-02       Impact factor: 15.419

4.  Plasma miRNAs as early biomarkers for detecting hepatocellular carcinoma.

Authors:  Yang Wen; Jing Han; Jianguo Chen; Jing Dong; Yongxiang Xia; Jibin Liu; Yue Jiang; Juncheng Dai; Jianhua Lu; Guangfu Jin; Jiali Han; Qingyi Wei; Hongbing Shen; Beicheng Sun; Zhibin Hu
Journal:  Int J Cancer       Date:  2015-04-21       Impact factor: 7.396

5.  A general resolution of intractable problems in polynomial time through DNA Computing.

Authors:  C A A Sanches; N Y Soma
Journal:  Biosystems       Date:  2016-09-28       Impact factor: 1.973

6.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

Review 7.  Cancer biomarker detection: recent achievements and challenges.

Authors:  Li Wu; Xiaogang Qu
Journal:  Chem Soc Rev       Date:  2015-03-05       Impact factor: 54.564

8.  Circulating microRNAs as stable blood-based markers for cancer detection.

Authors:  Patrick S Mitchell; Rachael K Parkin; Evan M Kroh; Brian R Fritz; Stacia K Wyman; Era L Pogosova-Agadjanyan; Amelia Peterson; Jennifer Noteboom; Kathy C O'Briant; April Allen; Daniel W Lin; Nicole Urban; Charles W Drescher; Beatrice S Knudsen; Derek L Stirewalt; Robert Gentleman; Robert L Vessella; Peter S Nelson; Daniel B Martin; Muneesh Tewari
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-28       Impact factor: 11.205

9.  Three-mode electrochemical sensing of ultralow microRNA levels.

Authors:  Mahmoud Labib; Nasrin Khan; Shahrokh M Ghobadloo; Jenny Cheng; John Paul Pezacki; Maxim V Berezovski
Journal:  J Am Chem Soc       Date:  2013-02-11       Impact factor: 15.419

Review 10.  Aptamers and their biological applications.

Authors:  Kyung-Mi Song; Seonghwan Lee; Changill Ban
Journal:  Sensors (Basel)       Date:  2012-01-09       Impact factor: 3.576

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  1 in total

1.  miR-451a targeting IL-6R activates JAK2/STAT3 pathway, thus regulates proliferation and apoptosis of multiple myeloma cells.

Authors:  Lingling Xu; Yuning Yao; Ting Lu; Libo Jiang
Journal:  J Musculoskelet Neuronal Interact       Date:  2022-06-01       Impact factor: 1.864

  1 in total

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