| Literature DB >> 32337850 |
Aleksandra Jezela-Stanek1,2, Elżbieta Ciara2, Dorota Jurkiewicz2, Marzena Kucharczyk2, Maria Jędrzejowska2,3, Krystyna H Chrzanowska2, Małgorzata Krajewska-Walasek2, Tomasz Żemojtel4,5.
Abstract
BACKGROUND: Due to extensive clinical and genetic heterogeneity of intellectual disability (ID) syndromes, the process of diagnosis is very challenging even for expert clinicians. Despite recent advancements in molecular diagnostics methodologies, a significant fraction of ID patients remains without a clinical diagnosis. METHODS, RESULTS, ANDEntities:
Keywords: zzm321990AP4M1zzm321990; zzm321990EP300zzm321990; zzm321990KMT2Azzm321990; zzm321990NR2F1zzm321990; zzm321990PURAzzm321990; zzm321990SATB2zzm321990; zzm321990SLC6A8zzm321990; zzm321990SMC1Azzm321990; HPO; PhenIX; Phenomizer; dysmorphology; intellectual disability patients
Mesh:
Year: 2020 PMID: 32337850 PMCID: PMC7507388 DOI: 10.1002/mgg3.1263
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Genotypes and phenotypes of the patients diagnosed in the study. Only the most striking phenotypic features are listed. Table S1 contains the full phenotypic spectrum of the diagnosed patients as well as reported phenotypic spectrums associated with the diagnosed syndromes
| Patient ID; Age; Gender; Diagnosis | Phenotypic Features (HPO terms) | Genotype |
|---|---|---|
| Patient 1; 14y; m; Rubinstein–Taybi syndrome 2, RSTS2; AD (MIM 613684) | Intellectual disability, moderate (HP:0002342), Facial grimacing (HP:00002273), Growth delay (HP:0001510), Bilateral cryptorchidism (HP:0008689), Microcephaly (HP:0000252), Narrow palpebral fissures (HP:0000581), Dental crowding (HP:0000678),), High, narrow palate (HP:0002705), Abnormality of the fingertips (Square)(HP:0001211) |
|
| Patient 2; 8.5y, m; Spastic Paraplegia 50, SPG50; AR (MIM 612936) | Intellectual disability, severe (HP:0010864), Seizures (HP:0001250), Generalized hypotonia (HP:0001290), Microcephaly (HP:0000252), Tapered fingers (HP:0001182), Abnormal myelination (HP:0012447) |
|
| Patient 3; 4y; f; Wiedemann–Steiner syndrome, WDSTS; AD (MIM 605130) | Intellectual disability, moderate (HP:0002342), Failure to thrive (HP:0001508), Muscular hypotonia (HP:0001252)/Generalized hypotonia (HP:0001290), Localized hirsutism (HP:0009889), Thin upper lip (HP:0000219), Clinodactyly of the fifth fingers (HP:0004209), Tapered fingers (HP:0001182) |
|
| Patient 4; 5y; f;Cornelia de Lange syndrome 2, CDLS2; XLD (MIM 300590) | Intellectual disability, severe (HP:0010864), Growth delay (HP:0001510), Seizures (HP:0001250)/EEG abnormality (HP:0002353), Hyperactivity (HP:0000752), Hirsutism (HP:0001007), Microcephaly (HP:0000252), Arched eyebrows (HP:0002553), Anteverted nares (HP:0000463) |
|
| Patient 5; 14y; f; Glass syndrome; AD (OMIM 612313) | Intellectual disability, severe (HP:0010864), Marfanoid habitus (HP:0001519), Scoliosis (HP:0002650), Synophrys (HP:0000664), Long fingers (HP:0100807) |
|
| Patient 6; 10y; m; Bosch–Boonstra–Schaaf optic atrophy syndrome, BBSOAS; AD (MIM615722) | Intellectual disability, severe (HP:0010864), Cerebral palsy (HP:0100021), Seizures (HP:0001250), Gait imbalance (HP:0002141), Recurrent infections (HP:0002719), Narrow hands (HP:0004283), Narrow foot (HP:0001786) |
|
| Patient 7; 7.5y; m; Cerebral creatine deficiency syndrome 1, SLC6A8; XLR (MIM300352) | Intellectual disability, moderate (HP:0002342), Autism (HP:0000717), Increased muscle tone (HP:0001276), Velvety skin (HP:0000977), Hyperextensibility of the finger joints (HP:0001187) |
|
| Patient 8; 4y; f; Mental retardation, autosomal dominant 31, MRD31; AD (MIM 616,158) | Intellectual disability (HP:0001249), Self‐injurious behavior (HP:0100716), Obesity (HP:0001513), Muscular hypotonia (HP:0001252), Loose skin (HP:0000973) |
|
The nomenclature of molecular variants follows the Human Genome Variation Society guidelines (HGVS, http://varnomen.hgvs.org/) using human cDNA sequences from RefSeq database.
Molecular variants were assessed by pathogenicity prediction tools: SIFT and MutationTaster software for nucleotide changes localized in coding sequence, and MaxEnt, NNSPLICE or SSF for nucleotide changes identified in intronic sequence. ClinVar database was search for known pathogenic variants (https://www.ncbi.nlm.nih.gov/clinvar/). The minor allele frequency (MAF) as recorded in ExAC and GnomAD databases.
Figure 1Photos of the patients diagnosed in this study. (a) Rubinstein–Taybi syndrome 2 (MIM 613684) patient. (b) Spastic Paraplegia 50 (MIM 612936) patient. (c) Wiedemann–Steiner syndrome (MIM 605130) patient. (d) Cornelia de Lange syndrome 2 (MIM 300590) patient. (e) Glass Syndrome (MIM 612313) patient. (f) Bosch–Boonstra–Schaaf optic atrophy syndrome (MIM615722) patient. (g) Cerebral creatine deficiency syndrome 1 (MIM 300352) patient. (h) Mental retardation, autosomal dominant 31 (MIM 616158) patient