| Literature DB >> 32337452 |
Kolle E Thomas1, Carla Slebodnick2, Abhik Ghosh1.
Abstract
A porphyrin cis tautomer, where the two central NH protons are on adjacentEntities:
Year: 2020 PMID: 32337452 PMCID: PMC7178774 DOI: 10.1021/acsomega.0c00517
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Crystal and Structure Refinement Data
| H2[Br8TCF3PP]·2CH3OH | H2[Br8TFPP]·2CH3OH | |
|---|---|---|
| chemical formula | C48H18Br8F12N4·2CH3OH | C44H18Br8F4N4·2CH3OH |
| formula weight | 1582.03 | 1381.99 |
| 99.99(11) | 100.00(10) | |
| λ (Å) | 1.54184 (Cu Kα) | 0.71073 (Mo Kα) |
| crystal system | monoclinic | tetragonal |
| space group | ||
| 36.7959(4) | 20.8825(5) | |
| 10.19901(8) | 20.8825(5) | |
| 30.7172(3) | 10.1100(3) | |
| β (deg) | 112.8497(11)° | |
| volume (Å3) | 10623.00(19) | 4408.8(2) |
| 8, 2 | 4, 1/4 | |
| ρ (calc) (g·cm–3) | 1.978 | 2.082 |
| μ (mm–1) | 7.997 | 7.339 |
| 6064 | 2648 | |
| crystal size (mm3) | 0.011 × 0.098 × 0.124 | 0.122 × 0.200 × 0.443 |
| θ range (deg) | 3.823–77.524 | 3.903–30.495 |
| index ranges | –46 ≤ | –29 ≤ |
| measured reflections | 177057 | 21857 |
| unique reflections | 22336 [ | 3361 [ |
| completeness | 100.0% (to θ = 67.684°) | 99.7% (to θ = 25.242°) |
| absorption correction | Gaussian | Gaussian |
| max. and min. transmission | 1.000 and 0.413 | 0.446 and 0.190 |
| data/restraints/parameters | 22 336/153/1505 | 3361/0/152 |
| 1.127 | 1.071 | |
| R1 [ | 0.0476, 0.1209 | 0.0703, 0.1878 |
| 0.0528, 0.1241 | 0.0990, 0.2051 | |
| Max/min residence density (e·Å–3) | 1.062/–0.634 | 3.147/–1.946 |
Figure 1Anisotropic displacement ellipsoid drawing (50% probability) depicting the two crystallographically unique molecules in the asymmetric unit of H2[Br8TCF3PP]·2CH3OH. The C–H hydrogens are omitted for clarity. The CF3 groups connected to C24, C31, C45, and C88 were modeled with 2-position disorder with relative occupancies that refined to 0.708(15)/0.292(15), 0.62(4)/0.38(4), 0.75(2)/0.25(2), and 0.63(4)/0.37(4), respectively.
Figure 2Anisotropic displacement ellipsoid drawing (50% probability) for H2[Br8TFPP]. The C–H hydrogens are omitted for clarity. The methanol C- and H-atoms and the pyrrole H-atoms are disordered and constrained to 50% occupancy by symmetry. Left: top view. Right: side view.
Summary of Cβ–Cα–Cα′–Cβ′ Dihedral Angles in Known and Plausible cis Porphyrin Structures
| meso-substituent | β-substituent | solvent(s) or other amphiprotic species | angles (deg) | |
|---|---|---|---|---|
| H2[Br8TCF3PP], molecule 1 | 4-F–C6H4 | Br | CH3OH | –104.1, 97.3, −98.8, 101.8 |
| H2[Br8TCF3PP], molecule 2 | 4-F–C6H4 | Br | CH3OH | 100.9, −98.2, 91.6, −95.7 |
| H2[Br8TFPP] | 4-CF3–C6H4 | Br | CH3OH | 91.3, −91.3, 91.3, −91.3 |
| TATQEN | 4-F–C6H4 | 7(CF3), 1H | H2O | 117.7, −118.5, 116.5, −114.1 |
| JIKJAR | 4-CF3–C6H4 | I | CH3OH, H2O | –107.4, 106.5, −97.7, 100.5 |
| HOCMOB | Ph | Ph | EtOH | 106.6, −108.0, 98.3, −93.13 |
Hydrogen-Bond Geometries (Å and deg)
| D–H···A | ∠(DHA) | |||
|---|---|---|---|---|
| H2[Br8TCF3PP]·2CH3OH | ||||
| N(1)–H(1)···O(1) | 0.88(2) | 1.95(3) | 2.812(5) | 166(6) |
| N(4)–H(4)···O(2) | 0.87(2) | 1.98(2) | 2.844(5) | 173(5) |
| N(5)–H(5)···O(4) | 0.87(2) | 1.95(3) | 2.797(5) | 165(6) |
| N(8)–H(8)···O(3) | 0.87(2) | 2.07(3) | 2.923(5) | 166(6) |
| O(1)–H(1S)···N(3) | 0.83(2) | 2.09(3) | 2.894(5) | 164(6) |
| O(2)–H(2S)···N(2) | 0.84(2) | 2.11(4) | 2.908(5) | 159(8) |
| O(3)–H(3S)···N(6) | 0.859(19) | 2.022(19) | 2.837(5) | 158(6) |
| O(4)–H(4S)···N(7) | 0.84(2) | 2.05(2) | 2.884(5) | 174(9) |
| H2[Br8TFPP]·2CH3OH | ||||
| N(1)–H(1)···O(1) | 0.88 | 2.00 | 2.862(7) | 168.2 |
| O(1)–H(1A)···N(1)#1 | 0.84 | 2.05 | 2.862(7) | 161.9 |
Symmetry transformations used to generate equivalent atoms: #1 −x + 1, −y + 1/2, z.
Figure 3Expanded view of the hydrogen-bonding networks in the two molecules of the asymmetric unit of H2[Br8TCF3PP]·2CH3OH.
Figure 4Simplified schematic representation of the two structures obtained in this work. The four nitrogen atoms connected by solid lines represent the saddle-shaped porphyrin. The two CH3OH solvent molecules are poised directly above and below the porphyrin, with each methanol oxygen within hydrogen-bonding distance of a pair of trans nitrogen atoms of the porphyrin. (a) Depiction of the hydrogen-bonding network in H2[Br8TCF3PP]·2CH3OH modeled as an ordered cis tautomer. (b) Disorder model in H2[Br8TFPP]·2CH3OH. Atoms in purple are at 50% occupancy. Careful analysis of the disorder is necessary to deduce chemically reasonable hydrogen-bonding networks.
Figure 5Two trans tautomer models. (a) Two equally contributing trans-conformation models that average to give the structure in Figure b. To obtain reasonable hydrogen-bonding motifs in this model, each contributing structure must have a protonated (CH3OH2+) and a deprotonated (CH3O–) “methanol.” These chemically unreasonable components are highlighted in red. (b) Two of the four equally contributing trans tautomer models with the methanol hydrogen on the protonated side of the saddle-shaped porphyrin oriented away from the trans N–H atoms to give a satisfactory hydrogen-bonding motif on that face. The opposite face, however, has a close N···O distance, 2.862(7) Å (red dotted line), with no hydrogen atom involved in a hydrogen bond. The green and purple atoms represent two different conformations of the disordered methanol. The two other equally contributing conformations are not shown but shown are the equivalent structures with the other pair of nitrogen atoms protonated.
Figure 6Four equally contributing conformations for H2[Br8TFPP]·2CH3OH. Disordered groups, each at 50% occupancy, are shown in purple. The cis tautomer is the only form that gives a chemically reasonable hydrogen-bonding model with neutral methanol. Upon averaging, the four structures depicted above give the disorder model shown in Figure b.
Figure 7Crystal structure of the SUNXIJ porphyrin core and methanol solvate depicting the hydrogen-bonding network.