| Literature DB >> 32331414 |
Krishna Chaitanya Pavani1, Xiaoyuan Lin2, Joachim Hamacher3, Wim Van Den Broeck4, Liesbeth Couck4, Luc Peelman2, An Hendrix5,6, Ann Van Soom1.
Abstract
Extracellular vesicles (EVs) have been identified as one of the communication mechanisms amongst embryos. They are secreted into the embryo culture medium and, as such, represent a source of novel biomarkers for identifying the quality of cells and embryos. However, only small amounts of embryo-conditioned medium are available, which represents a challenge for EV enrichment. Our aim is to assess the suitability of different EV separation methods to retrieve EVs with high specificity and sufficient efficiency. Bovine embryo-conditioned medium was subjected to differential ultracentrifugation (DU), OptiPrepTM density gradient (ODG) centrifugation, and size exclusion chromatography. Separated EVs were characterized by complementary characterization methods, including Western blot, electron microscopy, and nanoparticle tracking analysis, to assess the efficiency and specificity. OptiPrepTM density gradient centrifugation outperformed DU and SEC in terms of specificity by substantial removal of contaminating proteins such as ribonucleoprotein complexes (Argonaute-2 (AGO-2)) and lipoproteins (ApoA-I) from bovine embryo-derived EVs (density: 1.02-1.04, 1.20-1.23 g/mL, respectively). In conclusion, ODG centrifugation is the preferred method for identifying EV-enriched components and for improving our understanding of EV function in embryo quality and development.Entities:
Keywords: OptiprepTM density gradient; extracellular vesicles; isolation; protocols; size exclusion chromatography; ultracentrifugation
Year: 2020 PMID: 32331414 PMCID: PMC7215575 DOI: 10.3390/ijms21082942
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Schematic overview of three methods to separate EVs from bovine embryo-conditioned medium. A total of 1500 presumed zygotes were cultured in groups of 25 in 50 µL droplets of ultracentrifuged synthetic oviductal fluid enriched with non-essential and essential amino acids (SOFaa), ITS (5 µg/mL insulin; 5 µg/mL transferrin; 5 ng/mL selenium) and medium droplets were covered with mineral oil and incubated at 38 °C in 5% CO2, 5% O2, and 90% N2. After 8 days of post insemination, the bovine embryo-conditioned medium was pooled and equally divided over three separation methods: differential ultracentrifugation (DU), OptiPrepTM density gradient centrifugation (ODG), and size exclusion chromatography (SEC).
Figure 2Characterization of DU-EVs derived from bovine embryo-conditioned medium. (A) Western blot analysis of EV-associated protein CD63 (42 kDa) and non-EV associated proteins (ApoA-I (28 kDa)). (B) Transmission electron microscopy pictures of DU-EVs with white arrows representing protein aggregates and black arrows indicating EVs. Scale bar = 100/200 nm. (C) Size distribution profile of DU-EVs determined by NTA. Abbreviations: DU = differential ultracentrifugation; +ctr = follicular fluid derived EVs by OptiPrepTM density gradient; L = marker (protein ladder).
Comparison of extracellular vesicle isolation methods by time, price, and nanoparticle analysis.
| Isolation Technique | DU | ODG | SEC | ||
|---|---|---|---|---|---|
| Working Principle | EV isolation is based on sequential centrifugation steps to exclude large vesicles and cells debris and precipitate EVs | Combination of ultracentrifugation with sucrose gradient | EV isolation is based on the size difference between EVs and other particulate constituents | ||
| Total time (h) | 5 | 22 | 2 | ||
| Approximate price/sample (€) | 5 | 15 | 5 | ||
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| SEC 9 | SEC 10 | SEC 11 | |||
| Mean | 266.8 ± 2.1 nm | 151.3 ± 8.8 nm | 108.3 ± 6.8 nm | 119.2 ± 3.5 nm | 97.9 ± 2.2 nm |
| Mode | 186.1 ± 21.9 nm | 100.1 ± 20.4 nm | 102.3 ± 7.0 nm | 99.7 ± 6.0 nm | 68.4 ± 4.0 nm |
| SD | 91.2 ± 2.8 nm | 53.9 ± 26.3 nm | 34.9 ± 4.3 nm | 52.4 ± 6.9 nm | 39.4 ± 3.3 nm |
| D10 | 149.8 ± 2.3 nm | 86.7 ± 18.9 nm | 75.1 ± 7.0 nm | 74.8 ± 3.6 nm | 62.7 ± 4.1 nm |
| D50 | 264.5 ± 5.3 nm | 127.9 ± 6.5 nm | 101.1 ± 7.7 nm | 104.3 ± 3.8 nm | 86.4 ± 4.4 nm |
| D90 | 397.3 ± 9.1 nm | 211.8 ± 39.8 nm | 150.6 ± 6.9 nm | 173.8 ± 8.5 nm | 145.4 ± 5.8 nm |
| Nanoparticles/mL | 3.02 ± 0.36 × 1010 | 5.50 ± 2.70 × 109 | 2.09 ± 0.46 × 1010 | 1.50 ± 0.43 × 1011 | 1.13 ± 0.11 × 1010 |
Total time required (i.e., based on ease-of-use, turn-around time, hands-on time) and approximate cost per sample (i.e., based on the cost of centrifuge tubes and required solutions). The mode, mean value, standard deviation of size, and concentration for each EV isolation from 500 embryo culture medium method are provided. The value D50 represents the median size. Similarly, 90 percent of the distribution lies below the D90 value, and 10 percent of the population lies below the D10 value.
Figure 3Characterization of SEC-EVs derived from bovine embryo-conditioned medium. (A) Western blot analysis of EV-associated protein CD63 (42 kDa) and non-EV associated proteins (ApoA-I (28 kDa), Ago-2 (97 kDa)). (B) Transmission electron microscopy pictures of SEC-EVs with white arrows representing protein aggregates and black arrows indicating EVs. Scale bar = 100/200 nm. (C) Size distribution profile of SEC-EVs determined by NTA. Abbreviations: SEC 1 = size exclusion chromatography fraction 1 (similar for 2 to 16 fractions); +ctr = follicular fluid derived EVs by OptiPrepTM density gradient; L = marker (protein ladder).
Figure 4Characterization of ODG-EVs derived from bovine embryo-conditioned medium. (A) Western blot analysis of EV-associated protein CD63 (42 kDa) and non-EV associated proteins (ApoA-I (28 kDa), Ago-2 (97 kDa)). (B) Transmission electron microscopy pictures of ODG-EVs with white arrows representing protein aggregates and black arrows indicating EVs. Scale bar = 100/200 nm. (C) Size distribution profile of ODG-EVs determined by NTA. Abbreviations: DU = differential ultracentrifugation; ODG 1–4 = OptiPrepTM density gradient fractions 1 to 4 (similar for 5–7, 8–9. 10–12, 13–16); +ctr = follicular fluid derived EVs by ODG, L = marker (protein ladder), +Neg ctr = EVs derived from Lysate HEK 293T, +Positive ctr = Plasma pure.