| Literature DB >> 32326065 |
Yoshihide Usami1, Megumi Higuchi1, Koji Mizuki1, Mizuki Yamamoto1, Mao Kanki1, Chika Nakasone1, Yuya Sugimoto1, Makio Shibano2, Yoshihiro Uesawa3, Junko Nagai3, Hiroki Yoneyama1, Shinya Harusawa1.
Abstract
Inspired by the significant -glucosidase inhibitory activities of (+)- and (-)-pericosine E, we herein designed and synthesized 16 analogs of these marine natural products bearing a methoxy group instead of a chlorine atom at C6. Four of these compounds exhibited moderate -glucosidase inhibitory activities, which were weaker than those of the corresponding chlorine-containing species. The four compounds could be prepared by coupling reactions utilizing the (-)-pericosine B moiety. An additional in silico docking simulation suggested that the reason of reduced activity of the C6-methoxylated analogs might be an absence of hydrogen bonding between a methoxy group with the surrounding amino acid residues in the active site in -glucosidase.Entities:
Keywords: C6-methoxy analogue; anti-diabetes drug; docking simulation; marine natural product; pericosine E; α-glucosidase inhibitor
Year: 2020 PMID: 32326065 PMCID: PMC7230162 DOI: 10.3390/md18040221
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Natural pericosines (1–4) with synthetic 5 and newly designed analogs (6–9).
Scheme 1Syntheses of pericosine E analogs methoxy-substituted at C6 from (−)-11.
Glycosidase inhibitory activities of the synthesized compounds.
| Compound | IC50 (M) | ||||
|---|---|---|---|---|---|
| α-glucosidase | β-glucosidase | α-mannosidase | α-galactosidase | β-galactosidase | |
| (−)- | 1.5 × 10−3 | NI | NI | - | - |
| (+)- | 3.1 × 10−5 | NI | NI | - | - |
| (−)- | 1.2 × 10−5 | NI | NI | - | - |
| (+)- | 2.8 × 10−3 | NI | - | NI | NI |
| (−)- | 6.2× 10−3 | NI | - | NI | NI |
| (−)- | 7.8 × 10−3 | NI | NI | NI | NI |
| (−)- | NI | NI | NI | NI | NI |
| (−)- | NI | NI | NI | - | - |
| (+)- | NI | NI | NI | - | - |
| (+)- | NI | NI | NI | NI | NI |
| (+)- | NI | NI | NI | NI | 1.8 × 10−3 |
| (+)- | NI | NI | NI | NI | NI |
| (−)- | NI | NI | NI | NI | NI |
| (−)- | NI | NI | NI | NI | NI |
| (−)- | 1.7 × 10−3 | NI | NI | NI | 7.9 × 10−4 |
| (−)- | NI | NI | NI | - | - |
| (+)- | NI | NI | NI | - | - |
| (+)- | NI | NI | NI | NI | 8.3 × 10−4 |
| (+)- | NI | NI | NI | NI | 5.2 × 10−4 |
| Deoxynojirimycin (DNJ) | 6.3 × 10−4 | 5.5 × 10−4 | NI | - | - |
| NI | NI | 6.4 × 10−4 | - | - | |
| Deoxygalactonojirimycin | - | 1.4 × 10−4 | |||
NI—No inhibition: IC50 > 7.8 × 10−3 M; “-”: Not tested.
Figure 2Docking results obtained from a set of pericosine E derivatives as α-glucosidase inhibitors. Two-dimension interaction diagrams of compounds (−)-5 (left), (−)-24 (center), and glucose (right) with the α-glucosidase binding cavity were depicted.
Figure 3Protein–ligand interaction graphs of the active pocket of α-glucosidase with compounds, (A): (−)-5, (B) (−)-24, (C) glucose. The chlorine atom in the compound (−)-5 is shown in green, and the amino acid residues such as Val216, Glu277, Gln279, and Phe303 that interact with the chlorine atom are shown in purple.