Literature DB >> 32325212

Leveraging shared connectivity to aggregate heterogeneous datasets into a common response space.

Samuel A Nastase1, Yun-Fei Liu2, Hanna Hillman3, Kenneth A Norman4, Uri Hasson4.   

Abstract

Connectivity hyperalignment can be used to estimate a single shared response space across disjoint datasets. We develop a connectivity-based shared response model that factorizes aggregated fMRI datasets into a single reduced-dimension shared connectivity space and subject-specific topographic transformations. These transformations resolve idiosyncratic functional topographies and can be used to project response time series into shared space. We evaluate this algorithm on a large collection of heterogeneous, naturalistic fMRI datasets acquired while subjects listened to spoken stories. Projecting subject data into shared space dramatically improves between-subject story time-segment classification and increases the dimensionality of shared information across subjects. This improvement generalizes to subjects and stories excluded when estimating the shared space. We demonstrate that estimating a simple semantic encoding model in shared space improves between-subject forward encoding and inverted encoding model performance. The shared space estimated across all datasets is distinct from the shared space derived from any particular constituent dataset; the algorithm leverages shared connectivity to yield a consensus shared space conjoining diverse story stimuli.
Copyright © 2020. Published by Elsevier Inc.

Entities:  

Keywords:  Data harmonization; Functional connectivity; Hyperalignment; Naturalistic stimuli; fMRI

Year:  2020        PMID: 32325212     DOI: 10.1016/j.neuroimage.2020.116865

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  10 in total

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Journal:  Nat Rev Neurosci       Date:  2021-01-22       Impact factor: 34.870

2.  Inferring Brain State Dynamics Underlying Naturalistic Stimuli Evoked Emotion Changes With dHA-HMM.

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Journal:  Neuroinformatics       Date:  2022-03-04

3.  A massive 7T fMRI dataset to bridge cognitive neuroscience and artificial intelligence.

Authors:  Emily J Allen; Ghislain St-Yves; Yihan Wu; Jesse L Breedlove; Jacob S Prince; Logan T Dowdle; Matthias Nau; Brad Caron; Franco Pestilli; Ian Charest; J Benjamin Hutchinson; Thomas Naselaris; Kendrick Kay
Journal:  Nat Neurosci       Date:  2021-12-16       Impact factor: 28.771

4.  Hybrid hyperalignment: A single high-dimensional model of shared information embedded in cortical patterns of response and functional connectivity.

Authors:  Erica L Busch; Lukas Slipski; Ma Feilong; J Swaroop Guntupalli; Matteo Visconti di Oleggio Castello; Jeremy F Huckins; Samuel A Nastase; M Ida Gobbini; Tor D Wager; James V Haxby
Journal:  Neuroimage       Date:  2021-03-21       Impact factor: 6.556

5.  The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension.

Authors:  Samuel A Nastase; Yun-Fei Liu; Hanna Hillman; Asieh Zadbood; Liat Hasenfratz; Neggin Keshavarzian; Janice Chen; Christopher J Honey; Yaara Yeshurun; Mor Regev; Mai Nguyen; Claire H C Chang; Christopher Baldassano; Olga Lositsky; Erez Simony; Michael A Chow; Yuan Chang Leong; Paula P Brooks; Emily Micciche; Gina Choe; Ariel Goldstein; Tamara Vanderwal; Yaroslav O Halchenko; Kenneth A Norman; Uri Hasson
Journal:  Sci Data       Date:  2021-09-28       Impact factor: 8.501

6.  Teacher-student neural coupling during teaching and learning.

Authors:  Mai Nguyen; Ashley Chang; Emily Micciche; Meir Meshulam; Samuel A Nastase; Uri Hasson
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7.  BrainIAK: The Brain Imaging Analysis Kit.

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Review 8.  On the encoding of natural music in computational models and human brains.

Authors:  Seung-Goo Kim
Journal:  Front Neurosci       Date:  2022-09-20       Impact factor: 5.152

Review 9.  Hyperalignment: Modeling shared information encoded in idiosyncratic cortical topographies.

Authors:  James V Haxby; J Swaroop Guntupalli; Samuel A Nastase; Ma Feilong
Journal:  Elife       Date:  2020-06-02       Impact factor: 8.140

10.  The neural basis of intelligence in fine-grained cortical topographies.

Authors:  Ma Feilong; J Swaroop Guntupalli; James V Haxby
Journal:  Elife       Date:  2021-03-08       Impact factor: 8.140

  10 in total

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