| Literature DB >> 32318101 |
Djafarou Ngouh Pajoudoro1, Daniel Lissouck2, Baruch Ateba Amana1, Joseph Zobo Mfomo3, A E B Abdallah2, Alfred Aristide Flavien Toze1, Désiré Bikele Mama1.
Abstract
The elucidation of the complexation of lapachol and its derivatives to Fe2+ cation has been done using the density functional theory (DFT). This complexation has been limited to bidentate and tridentate to Fe2+ cation. Geometry optimizations have been implemented in gas and solution phase (water, acetonitrile, chlorobenzene, benzene, and toluene) for ligands at B3LYP/6-311++G (d,p) level of theory using B3LYP/6-31+G(d,p) optimized data as starting point. But, the geometrical optimizations in solution phase of the 22 complexes analyzed of lapachol and its derivatives to Fe2+ cation were restricted to acetonitrile and benzene. The complexation energy and the metal ion affinity (MIA) have also been calculated using the B3LYP method. The results obtained indicated a proportionality between the MIA values and the retained charge on Fe2+ cation for k 2-(O1,O2) modes. But, an inverse proportionality has been yielded between these two parameters for k 3-(O2, C=C) tridentate modes. For k3-(O3,C=C) tridentate mode coordination, the higher stability has been obtained. In this latter tridentate coordination in gas phase, the topological analysis of complexes exhibits the fact that the electron density is concentrated between the O3 oxygen atom of the ligand attached to Fe2+ and this metal cation. Moreover, the hydrogen bond strength calculated for isolated ligands (situated between 23.92 and 30.15 kJ/mol) is in the range of normal HBs. Collectively, all the complexation processes have shown to be highly exothermic. Our results have also shown that the electron extraction from Fe 2+ ...La i complexes is more difficult compared to that from free ligands.Entities:
Year: 2020 PMID: 32318101 PMCID: PMC7150675 DOI: 10.1155/2020/2103239
Source DB: PubMed Journal: Bioinorg Chem Appl Impact factor: 7.778
Figure 1Numbering system used for Lai free ligand in their various coordination modes.
Figure 2Numbering system used for Fe2+...Lai complexes in their various coordination modes.
Values (kJ/mol) of metal ion affinity (MIA), metal binding enthalpy, and metal binding free energy in various media at B3LYP/6-311++G(d,p).
| Gas | Acetonitrile | Benzene | |||||||
|---|---|---|---|---|---|---|---|---|---|
|
| MIA | Δ | Δ | MIA | Δ | Δ | MIA | Δ | Δ |
|
| — | — | — | — | — | — | −448.997 | −451.478 | −411.684 |
|
| −1876.9 | −1879.4 | −1841.2 | −135.203 | −137.681 | −97.466 | — | — | — |
|
| −976.6 | −979.1 | −935.9 | — | — | — | — | — | — |
|
| −956.6 | −959.1 | −922.2 | −164.834 | −412.429 | −414.910 | −369.907 | ||
|
| −961.8 | −964.2 | −928.2 | −162.356 | −1741.940 | −116.344 | −524.769 | −527.248 | −479.892 |
|
| −2558.1 | −2560.6 | −2524.5 | −1739.462 | −1739.462 | −1701.550 | −2038.123 | −2040.602 | −1998.901 |
|
| −2594.9 | −1879.4 | −2561.2 | — | — | — | — | — | — |
|
| |||||||||
|
| 1178.75 | 1181.2 | −1131.1 | −207.6 | −210.100 | −159.3 | |||
|
| −2018.37 | −201840.2 | −201797.9 | −146.868 | −149.346 | −99.155 | — | — | — |
|
| −941.0 | −943.5 | −1841.2 | −51.541 | −540.017 | −8.210 | — | — | — |
|
| −1105.1 | −989.7 | −2254.5 | — | — | — | — | — | — |
|
| −2612.5 | 2208.5 | −2574.6 | — | — | — | — | — | — |
|
| −10595.28 | −1153.7 | −105911.0 | — | — | — | — | — | — |
|
| −1152.3 | −115478.7 | −1106.8 | −190.365 | −192.843 | −141.272 | −564.464 | −566.945 | −512.030 |
|
| −1101.3 | −1103.7 | −1058.3 | −169.374 | −171.852 | −126.575 | −521.939 | −443.670 | |
|
| −1118.3 | 1120.8 | −1073.1 | — | — | — | — | — | — |
|
| −1198.5 | −1201.0 | −1161.7 | — | — | — | −618.392 | −620.870 | −577.61 |
|
| −105980.9 | −105983.4 | −105938.6 | −104253.8 | −104256.3 | −104210.4 | −105363.7 | −105366.1 | −105316.6 |
Figure 3Correlation between the MIA (kJ/mol) and retained charge (Q/e) of Fe in k-(O,O) and k-(O,C=C) coordination mode.
Figure 4Correlation between the MIA (kJ/mol) and retained charge (Q/e) of Fe in k-(O,C=C) coordination mode.
Values of ligand...Fe2+ distance, NBO charge carried by Fe2+ cation, and topological parameters of ligand...Fe2+ interactions at B3LYP/6-311++G(d,p) (bold face numbers related to X…Fe2+ interaction and lower italicized numbers related to Y⋯Fe2+ interaction).
| Complexes |
| Q/e |
|
| ∇2 |
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| ||||||||||||
|
| 1.908 | 1.432 | −1876.9 | 0.0880 | 0.618 | −6.120 | 411.805 | −417.924 | −0.0447 | 0.7587 | −0.0959 | 1.146224 |
|
| 1.843 | 1.008 | −976.6 | 0.1090 | 0.720 | −36.700 | 509.125 | −545.829 | 0.9478 | −0.0820 | −0.1460 | 0.780231 |
|
| 1.835 | 1.027 | −956.6 | 0.1110 | 0.736 | −41.019 | 524.223 | −565.243 | −0.0802 | 0.9712 | −0.1548 | 0.930247 |
|
| 1.844 | 0.990 | −961.8 | 0.1070 | 0.724 | −33.340 | 508.850 | −542.190 | −0.0731 | 0.9355 | −0.1380 | 0.887768 |
|
| 1.835 | 0.990 | −2558.1 | 0.1110 | 0.729 | −39.050 | 517.854 | −556.905 | 0.9616 | −0.0791 | −0.1529 | 0.932448 |
|
| 1.851 | 0.963 | −2594.9 | 0.1050 | 0.715 | −28.530 | 497.552 | −526.082 | −0.0686 | 0.9111 | −0.1280 | 0.866595 |
|
| ||||||||||||
|
| 1.786 | 0.767 | −1151.2 | 0.2870 | −0.801 | −864.007 | 337.436 | −1200.786 | 0.3667 | −0.5037 | −0.6643 | 0.318769 |
|
| ||||||||||||
|
| 1.808 | 0.839 | −1178.7 | 0.1190 | 0.802 | −53.830 | 580.507 | −634.338 | 1.0499 | −0.096 | −0.1518 | 0.585220 |
|
| ||||||||||||
|
| 1.784 | 0.618 | −20183.7 | 0.1320 | 0.764 | −86.608 | 588.395 | −675.003 | 1.1899 | −0.2043 | −0.2212 | 0.082728 |
|
| 2.053 | 0.674 | −941.0 | 0.0527 | 0.429 | −17.738 | 263.930 | −246.192 | 0.4645 | −0.0233 | −0.0121 | 0.919931 |
|
| 1.772 | 0.538 | −1105.1 | 0.1389 | 0.7834 | −100.780 | 614.954 | −715.734 | 1.2696 | −0.2022 | −0.2840 | 0.404762 |
|
| 1.918 | 0.607 | −2612.5 | 0.0885 | 0.5752 | −11.925 | 389.493 | −401.418 | 0.7561 | −0.1154 | −0.6549 | 0.762316 |
|
| 1.808 | 0.521 | −105952.8 | 0.1264 | 0.6941 | −77.219 | 532.792 | −610.011 | 1.1400 | −0.1991 | −0.2468 | 0.239906 |
|
| ||||||||||||
|
| 1.799 | 0.618 | −1152.30 | 0.1240 | 0.7783 | −69.056 | 579.899 | −648.955 | 1.1161 | −0.2081 | −0.1297 | 0.603944 |
|
| 1.788 | 1.016 | −1101.3 | 0.1303 | 0.8045 | −81.455 | 609.483 | −690.936 | 0.1162 | −0.1942 | −0.1638 | 0.185365 |
|
| 1.794 | 0.513 | −1118.3 | 0.1267 | 0.782 | −74.266 | 587.632 | −661.899 | 1.1585 | −0.1937 | −0.1827 | 0.060095 |
|
| 1.865 | 0.948 | −1198.5 | 0.1046 | 0.6198 | −35.057 | 441.884 | −476.941 | 0.9067 | −0.1091 | −0.1778 | 0.630515 |
|
| 1.821 | 0.521 | −105980.9 | 0.1171 | 0.6875 | −57.602 | 508.853 | −566.455 | 1.0486 | −0.2032 | −0.1579 | 0.287284 |