| Literature DB >> 32317408 |
Sarah S Cherian1, Megha Agrawal1, Atanu Basu2, Priya Abraham3, Raman R Gangakhedkar4, Balram Bhargava5.
Abstract
The newly emerged 2019 novel coronavirus (CoV), named as severe acute respiratory syndrome CoV-2 (SARS-CoV-2), like SARS-CoV (now, SARS-CoV-1) and Middle East respiratory syndrome CoV (MERS-CoV), has been associated with high infection rates with over 36,405 deaths. In the absence of approved marketed drugs against coronaviruses, the treatment and management of this novel CoV disease (COVID-19) worldwide is a challenge. Drug repurposing that has emerged as an effective drug discovery approach from earlier approved drugs could reduce the time and cost compared to de novo drug discovery. Direct virus-targeted antiviral agents target specific nucleic acid or proteins of the virus while host-based antivirals target either the host innate immune responses or the cellular machineries that are crucial for viral infection. Both the approaches necessarily interfere with viral pathogenesis. Here we summarize the present status of both virus-based and host-based drug repurposing perspectives for coronaviruses in general and the SARS-CoV-2 in particular.Entities:
Keywords: COVID-19; drugs; host-based; repurposing; severe acute respiratory syndrome coronavirus 2; virus-based; Coronavirus
Mesh:
Substances:
Year: 2020 PMID: 32317408 PMCID: PMC7357399 DOI: 10.4103/ijmr.IJMR_585_20
Source DB: PubMed Journal: Indian J Med Res ISSN: 0971-5916 Impact factor: 2.375
Fig. 1Schematic representation of the genomic organization of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in comparison with bat-CoV RaTG 13, SARS-CoV-1 and Middle East respiratory syndrome coronavirus (MERS-CoV). Below are the modelled three-dimensional structures of the major virus based antiviral targets [3C-like protease (3CLpro), RNA-dependent RNA polymerase (RdRp) and papain-like protease (PL2pro)] based on SARS-CoV-1 templates obtained from Protein Data Bank. Also depicted is structure of the spike glycoprotein of SARS-CoV-2 released recently (6VSB.pdb). Per cent identity between coding regions of the specific viral genomes depicted was calculated using p-distance method of MEGA software v7.0 (). Source: Refs 913.
Fig. 2Schematic representation of the coronavirus replication cycle depicting the potential therapeutics against different virus-based (red) and host-based (blue) targets for coronavirus drug repurposing. The drugs effective against the various targets are mentioned in the brackets. 3CLpro, cysteine-like protease; PL2pro, papain-like protease; nsp, non-structural protein; RdRp, RNA-dependent RNA polymerase; pp1ab, polyprotein ab; M, membrane protein; E, envelope protein; S, spike protein; N, nucleocapsid protein; UTR, untranslated region; ORF, open reading frame; MPA, mycophenolic acid; ERK-MAPK, extracellular signal-regulated kinase mitogen-activated protein kinase; poly(I:C), polyinosinic: polycytidylic acid; NAAE, N-(2-aminoethyl)-1-aziridine-ethanamine; YS110, a recombinant humanized IgG1 anti-DPP4 mAb; DPP4, dipeptidyl peptidase 4; CYP, cyclophilin. Source: Refs 8101415161718192021.
Fig. 3Docking interaction analysis of HIV inhibitors in the substrate binding cavity of modelled severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) main protease (3C-like protease). (A) ritonavir (Docking score = −11.29 kcal/mol); (B) lopinavir (Docking score = −9.6 kcal/mol). The P4–P1' side chains of the inhibitor are labelled. Comparison of the docked poses of the inhibitors reveals that the occupancy at the respective active site cavity subsites corresponding to P1' and P1 for lopinavir and P3 and P4 for ritanovir that are crucial for competitive inhibition of the polyprotein substrate, are good.