Literature DB >> 32308839

genoDraw: A Web Tool for Developing Pedigree Diagrams Using the Standardized Human Pedigree Nomenclature Integrated with Biomedical Vocabularies.

Luciano Garcia-Giordano1, Sergio Paraiso-Medina1, Raul Alonso-Calvo1, Francisco Javier Fernández-Martínez2, Victor Maojo1.   

Abstract

The integration of genetic information in current clinical routine has raised a need for tools to exploit family genetic knowledge. On the clinical side, an application for managing and visualizing pedigree diagrams could provide genetics specialists with an integrated environment with potential positive impact on their current practice. This article presents a web tool (genoDraw) that provides clinical practitioners with the ability to create, maintain and visualize patients' and their families' information in the form of pedigree diagrams. genoDraw implements a graph-based three-step process for generating diagrams according to a de facto standard in the area and clinical terminologies. It also complies with five characteristics identified as indispensable for the next-generation of pedigree drawing software: comprehensiveness, data-drivenness, automation, interactivity and compatibility with biomedical vocabularies. The platform was implemented and tested, confirming its potential interest to clinical routine. ©2019 AMIA - All rights reserved.

Entities:  

Year:  2020        PMID: 32308839      PMCID: PMC7153108     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  7 in total

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Authors:  Michael Bostock; Vadim Ogievetsky; Jeffrey Heer
Journal:  IEEE Trans Vis Comput Graph       Date:  2011-12       Impact factor: 4.579

2.  IPSEP-COLA: an incremental procedure for separation constraint layout of graphs.

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Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Sep-Oct       Impact factor: 4.579

3.  SNOMED-CT: The advanced terminology and coding system for eHealth.

Authors:  Kevin Donnelly
Journal:  Stud Health Technol Inform       Date:  2006

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Authors:  Edward H Trager; Ritu Khanna; Adrian Marrs; Lawrence Siden; Kari E H Branham; Anand Swaroop; Julia E Richards
Journal:  Bioinformatics       Date:  2007-05-08       Impact factor: 6.937

5.  Standardized human pedigree nomenclature: update and assessment of the recommendations of the National Society of Genetic Counselors.

Authors:  Robin L Bennett; Kathryn Steinhaus French; Robert G Resta; Debra Lochner Doyle
Journal:  J Genet Couns       Date:  2008-09-16       Impact factor: 2.537

6.  Recommendations for standardized human pedigree nomenclature. Pedigree Standardization Task Force of the National Society of Genetic Counselors.

Authors:  R L Bennett; K A Steinhaus; S B Uhrich; C K O'Sullivan; R G Resta; D Lochner-Doyle; D S Markel; V Vincent; J Hamanishi
Journal:  Am J Hum Genet       Date:  1995-03       Impact factor: 11.025

7.  Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Authors:  Sebastian Köhler; Leigh Carmody; Nicole Vasilevsky; Julius O B Jacobsen; Daniel Danis; Jean-Philippe Gourdine; Michael Gargano; Nomi L Harris; Nicolas Matentzoglu; Julie A McMurry; David Osumi-Sutherland; Valentina Cipriani; James P Balhoff; Tom Conlin; Hannah Blau; Gareth Baynam; Richard Palmer; Dylan Gratian; Hugh Dawkins; Michael Segal; Anna C Jansen; Ahmed Muaz; Willie H Chang; Jenna Bergerson; Stanley J F Laulederkind; Zafer Yüksel; Sergi Beltran; Alexandra F Freeman; Panagiotis I Sergouniotis; Daniel Durkin; Andrea L Storm; Marc Hanauer; Michael Brudno; Susan M Bello; Murat Sincan; Kayli Rageth; Matthew T Wheeler; Renske Oegema; Halima Lourghi; Maria G Della Rocca; Rachel Thompson; Francisco Castellanos; James Priest; Charlotte Cunningham-Rundles; Ayushi Hegde; Ruth C Lovering; Catherine Hajek; Annie Olry; Luigi Notarangelo; Morgan Similuk; Xingmin A Zhang; David Gómez-Andrés; Hanns Lochmüller; Hélène Dollfus; Sergio Rosenzweig; Shruti Marwaha; Ana Rath; Kathleen Sullivan; Cynthia Smith; Joshua D Milner; Dorothée Leroux; Cornelius F Boerkoel; Amy Klion; Melody C Carter; Tudor Groza; Damian Smedley; Melissa A Haendel; Chris Mungall; Peter N Robinson
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

  7 in total
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1.  Desiderata for High Quality AMIA Presentation Files.

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Journal:  AMIA Annu Symp Proc       Date:  2021-01-25
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