Literature DB >> 32303701

The SWI/SNF complex in cancer - biology, biomarkers and therapy.

Priya Mittal1, Charles W M Roberts2.   

Abstract

Cancer genome-sequencing studies have revealed a remarkably high prevalence of mutations in genes encoding subunits of the SWI/SNF chromatin-remodelling complexes, with nearly 25% of all cancers harbouring aberrations in one or more of these genes. A role for such aberrations in tumorigenesis is evidenced by cancer predisposition in both carriers of germline loss-of-function mutations and genetically engineered mouse models with inactivation of any of several SWI/SNF subunits. Whereas many of the most frequently mutated oncogenes and tumour-suppressor genes have been studied for several decades, the cancer-promoting role of mutations in SWI/SNF genes has been recognized only more recently, and thus comparatively less is known about these alterations. Consequently, increasing research interest is being focused on understanding the prognostic and, in particular, the potential therapeutic implications of mutations in genes encoding SWI/SNF subunits. Herein, we review the burgeoning data on the mechanisms by which mutations affecting SWI/SNF complexes promote cancer and describe promising emerging opportunities for targeted therapy, including immunotherapy with immune-checkpoint inhibitors, presented by these mutations. We also highlight ongoing clinical trials open specifically to patients with cancers harbouring mutations in certain SWI/SNF genes.

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Year:  2020        PMID: 32303701      PMCID: PMC8723792          DOI: 10.1038/s41571-020-0357-3

Source DB:  PubMed          Journal:  Nat Rev Clin Oncol        ISSN: 1759-4774            Impact factor:   66.675


  173 in total

1.  A major chromatin regulator determines resistance of tumor cells to T cell-mediated killing.

Authors:  Deng Pan; Aya Kobayashi; Peng Jiang; Lucas Ferrari de Andrade; Rong En Tay; Adrienne M Luoma; Daphne Tsoucas; Xintao Qiu; Klothilda Lim; Prakash Rao; Henry W Long; Guo-Cheng Yuan; John Doench; Myles Brown; X Shirley Liu; Kai W Wucherpfennig
Journal:  Science       Date:  2018-01-04       Impact factor: 47.728

2.  Germ-line and acquired mutations of INI1 in atypical teratoid and rhabdoid tumors.

Authors:  J A Biegel; J Y Zhou; L B Rorke; C Stenstrom; L M Wainwright; B Fogelgren
Journal:  Cancer Res       Date:  1999-01-01       Impact factor: 12.701

3.  Highly penetrant, rapid tumorigenesis through conditional inversion of the tumor suppressor gene Snf5.

Authors:  Charles W M Roberts; Monique M Leroux; Mark D Fleming; Stuart H Orkin
Journal:  Cancer Cell       Date:  2002-11       Impact factor: 31.743

4.  Consistent SMARCB1 homozygous deletions in epithelioid sarcoma and in a subset of myoepithelial carcinomas can be reliably detected by FISH in archival material.

Authors:  Francois Le Loarer; Lei Zhang; Christopher D Fletcher; Agnes Ribeiro; Samuel Singer; Antoine Italiano; Agnes Neuville; Aurélie Houlier; Frederic Chibon; Jean-Michel Coindre; Cristina R Antonescu
Journal:  Genes Chromosomes Cancer       Date:  2014-03-03       Impact factor: 5.006

Review 5.  Hereditary SWI/SNF complex deficiency syndromes.

Authors:  Abbas Agaimy; William D Foulkes
Journal:  Semin Diagn Pathol       Date:  2018-02-01       Impact factor: 3.464

Review 6.  SWI/SNF Complex-Deficient Soft Tissue Neoplasms: A Pattern-Based Approach to Diagnosis and Differential Diagnosis.

Authors:  Abbas Agaimy
Journal:  Surg Pathol Clin       Date:  2019-03

Review 7.  The SWI/SNF chromatin remodelling complex: Its role in maintaining genome stability and preventing tumourigenesis.

Authors:  Peter M Brownlee; Cornelia Meisenberg; Jessica A Downs
Journal:  DNA Repair (Amst)       Date:  2015-05-01

8.  p53 Is a Master Regulator of Proteostasis in SMARCB1-Deficient Malignant Rhabdoid Tumors.

Authors:  Alessandro Carugo; Rosalba Minelli; Luigi Sapio; Melinda Soeung; Federica Carbone; Frederick S Robinson; James Tepper; Ziheng Chen; Sara Lovisa; Maria Svelto; Samirkumar Amin; Sanjana Srinivasan; Edoardo Del Poggetto; Sara Loponte; Francesca Puca; Prasenjit Dey; Gabriel G Malouf; Xiaoping Su; Liren Li; Dolores Lopez-Terrada; Dinesh Rakheja; Alexander J Lazar; George J Netto; Priya Rao; Alessandro Sgambato; Anirban Maitra; Durga N Tripathi; Cheryl L Walker; Jose A Karam; Timothy P Heffernan; Andrea Viale; Charles W M Roberts; Pavlos Msaouel; Nizar M Tannir; Giulio F Draetta; Giannicola Genovese
Journal:  Cancer Cell       Date:  2019-02-11       Impact factor: 38.585

9.  Chromatin remodeling gene AT-rich interactive domain-containing protein 1A suppresses gastric cancer cell proliferation by targeting PIK3CA and PDK1.

Authors:  Qian Zhang; Hai-Bo Yan; Jie Wang; Shu-Jian Cui; Xiao-Qing Wang; Ying-Hua Jiang; Li Feng; Peng-Yuan Yang; Feng Liu
Journal:  Oncotarget       Date:  2016-07-19

10.  Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:  Michael S Lawrence; Petar Stojanov; Paz Polak; Gregory V Kryukov; Kristian Cibulskis; Andrey Sivachenko; Scott L Carter; Chip Stewart; Craig H Mermel; Steven A Roberts; Adam Kiezun; Peter S Hammerman; Aaron McKenna; Yotam Drier; Lihua Zou; Alex H Ramos; Trevor J Pugh; Nicolas Stransky; Elena Helman; Jaegil Kim; Carrie Sougnez; Lauren Ambrogio; Elizabeth Nickerson; Erica Shefler; Maria L Cortés; Daniel Auclair; Gordon Saksena; Douglas Voet; Michael Noble; Daniel DiCara; Pei Lin; Lee Lichtenstein; David I Heiman; Timothy Fennell; Marcin Imielinski; Bryan Hernandez; Eran Hodis; Sylvan Baca; Austin M Dulak; Jens Lohr; Dan-Avi Landau; Catherine J Wu; Jorge Melendez-Zajgla; Alfredo Hidalgo-Miranda; Amnon Koren; Steven A McCarroll; Jaume Mora; Brian Crompton; Robert Onofrio; Melissa Parkin; Wendy Winckler; Kristin Ardlie; Stacey B Gabriel; Charles W M Roberts; Jaclyn A Biegel; Kimberly Stegmaier; Adam J Bass; Levi A Garraway; Matthew Meyerson; Todd R Golub; Dmitry A Gordenin; Shamil Sunyaev; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2013-06-16       Impact factor: 49.962

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  86 in total

1.  Acute BAF perturbation causes immediate changes in chromatin accessibility.

Authors:  Sandra Schick; Sarah Grosche; Katharina Eva Kohl; Danica Drpic; Martin G Jaeger; Nara C Marella; Hana Imrichova; Jung-Ming G Lin; Gerald Hofstätter; Michael Schuster; André F Rendeiro; Anna Koren; Mark Petronczki; Christoph Bock; André C Müller; Georg E Winter; Stefan Kubicek
Journal:  Nat Genet       Date:  2021-02-08       Impact factor: 38.330

2.  Structure of human chromatin-remodelling PBAF complex bound to a nucleosome.

Authors:  Junjie Yuan; Kangjing Chen; Wenbo Zhang; Zhucheng Chen
Journal:  Nature       Date:  2022-04-27       Impact factor: 49.962

3.  Discovering biomarkers for hormone-dependent tumors: in silico study on signaling pathways implicated in cell cycle and cytoskeleton regulation.

Authors:  Klaudia Waszczykowska; Karolina Prażanowska; Żaneta Kałuzińska; Damian Kołat; Elżbieta Płuciennik
Journal:  Mol Genet Genomics       Date:  2022-05-09       Impact factor: 3.291

Review 4.  ARID1 proteins: from transcriptional and post-translational regulation to carcinogenesis and potential therapeutics.

Authors:  Olena Odnokoz; Cindy Wavelet-Vermuse; Shelby L Hophan; Serdar Bulun; Yong Wan
Journal:  Epigenomics       Date:  2021-04-23       Impact factor: 4.778

Review 5.  Deregulation of enhancer structure, function, and dynamics in acute lymphoblastic leukemia.

Authors:  Laura Belver; Robert Albero; Adolfo A Ferrando
Journal:  Trends Immunol       Date:  2021-04-12       Impact factor: 16.687

6.  Transglutaminase 2 mediates transcriptional regulation through BAF250a polyamination.

Authors:  Hyo-Jun Kim; Jin-Haeng Lee; Sung-Yup Cho; Ju-Hong Jeon; In-Gyu Kim
Journal:  Genes Genomics       Date:  2021-02-08       Impact factor: 1.839

Review 7.  Biomolecular Condensates and Cancer.

Authors:  Ann Boija; Isaac A Klein; Richard A Young
Journal:  Cancer Cell       Date:  2021-01-07       Impact factor: 31.743

Review 8.  The biochemical and genetic discovery of the SAGA complex.

Authors:  Patrick A Grant; Fred Winston; Shelley L Berger
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-12-16       Impact factor: 4.490

Review 9.  Molecular events in neuroendocrine prostate cancer development.

Authors:  Yong Wang; Yu Wang; Xinpei Ci; Stephen Y C Choi; Francesco Crea; Dong Lin; Yuzhuo Wang
Journal:  Nat Rev Urol       Date:  2021-07-21       Impact factor: 14.432

Review 10.  Recent Advances in Understanding the Role of Autophagy in Paediatric Brain Tumours.

Authors:  Francesca Gatto; Giacomo Milletti; Andrea Carai; Angela Mastronuzzi; Francesca Nazio
Journal:  Diagnostics (Basel)       Date:  2021-03-09
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