| Literature DB >> 32287379 |
Steven M Goodman1, Lauren M Chan2, Michael D Nowak2, Anne D Yoder2.
Abstract
We examined patterns of genetic variation in Rousettus madagascariensis from Madagascar and R. obliviosus from the Comoros (Grande Comore, Anjouan, and Mohéli). Genetic distances among individuals on the basis of 1,130 base pairs of the mitochondrial cytochrome b (Cytb) locus were estimated from specimens collected from 17 sites on Madagascar, 3 sites on Grande Comore, 3 sites on Anjouan, and 2 sites on Mohéli. We observed little variation in Madagascar and nearshore island samples (maximum 1.1%) and interisland Comoros samples (maximum 1.8%). In contrast, pairwise distances between different sampled sites on Madagascar and the Comoros varied from 8.5% to 13.2%. For 131 Malagasy animals, 69 unique haplotypes were recovered with 86 variable sites, and for 44 Comorian individuals, 17 unique haplotypes were found with 30 variable sites. No haplotype was shared between Madagascar and the Comoros, adding to previous morphological evidence that these 2 populations should be considered separate species. Cytb data showed that Rousettus populations of Madagascar (including nearshore islands) and the Comoros are respectively monophyletic and display no geographic structure in haplotype diversity, and that R. madagascariensis and R. obliviosus are strongly supported as sister to each other relative to other Rousettus species. Genotypic data from 6 microsatellite loci confirm lack of geographic structure in either of the 2 species. In pairwise tests of population differentiation, the only significant values were between samples from the Comoro Islands and Madagascar (including nearshore islands). Estimates of current and historical demographic parameters support population expansion in both the Comoros and Madagascar. These data suggest a more recent and rapid demographic expansion in Madagascar in comparison with greater population stability on the Comoros. On the basis of available evidence, open-water crossings approaching 300 km seem rarely traversed by Rousettus, and, if successful, can result in genetic isolation and subsequent differentiation.Entities:
Keywords: Comoros; Madagascar; Rousettus; cytochrome b; microsatellite; phylogeny; phylogeography; western Indian Ocean islands
Year: 2010 PMID: 32287379 PMCID: PMC7108659 DOI: 10.1644/09-MAMM-A-283.1
Source DB: PubMed Journal: J Mammal ISSN: 0022-2372 Impact factor: 2.416
Fig. 1.Map of principal collection localities on Madagascar and nearshore islands (Ile Sainte Marie, Nosy Komba, and Nosy Be) and in the Comoros Archipelago (Grande Comore, Anjouan, and Mohéli) of Rousettus specimens used in the current study.
Fig. 2.A) Bayesian consensus phylogram of Rousettus cytochrome b data. Branches of phylogram are labeled with posterior probability of bipartition, and scale bar for branches is provided below each tree. B) Detail of haplotype tree for samples of R. obliviosus. Tips of tree are labeled according to source islands: ANJ = Anjouan, MOH = Mohéli, and GC = Grande Comore. C) Detail of haplotype tree for samples of R. madagascariensis. Tips of tree are labeled according to source populations: ANH = Anjohibe, ANS = Anjanaharibe-Sud, NT = Northern Tip, NB = Nosy Be and Nosy Komba, SM = IIe Sainte Marie, BEM = Bemaraha/Ambohijanahary, NAM = Namoroka, and SO = Southern. Scale bar for branches is provided below each tree.
Average pairwise distances of cytochrome b sequence data within 3 species of Rousettus from Madagascar, the Comoro Islands, and China.
| Uncorrected | HKY+I+G | |
|---|---|---|
| Comoros: | 0.005578 | 0.005775 |
| Madagascar: | 0.005382 | 0.005555 |
| China: | 0.007654 | 0.007983 |
| Total data set | 0.060776 | 0.102126 |
| Madagascar: Comoros | 0.062075 | 0.086758 |
Observed heterozygosity (H, gene diversity (H, and F (with 95% CI) for all individuals and each species individually. Confidence intervals for F were generated with 10,000 bootstrap replicates.
|
|
|
| |
|---|---|---|---|
| All | 0.822 | 0.852 | 0.050 (0.026–0.083) |
| Madagascar | 0.866 | 0.901 | 0.004 (0–0.009) |
| Comoros | 0.720 | 0.740 | 0.009 (−0.009–0.023) |
F pairwise values of Rousettus madagascariensis from Madagascar and R. obliviosus from the Comoros; sample size (n) is indicated in first column and significant values are in bold. The first 7 sites are from Madagascar and include the nearshore island of Ile Sainte Marie in the east and a nearshore island complex of Nosy Be and Nosy Komba in the northwest. The last 3 sites are from 3 different islands in the Comoros Archipelago.
| Southern | Bemaraha/Ambohij anahary | Ile Ste. Marie | Namoroka | Anjohibe | Nosy Be/Nosy Komba | Northern | Grande Comore | Anjouan | |
|---|---|---|---|---|---|---|---|---|---|
| Southern ( | |||||||||
| Bemaraha/Ambohijanahary ( | 0.007 | ||||||||
| He Ste. Marie ( | 0.0133 | −0.025 | |||||||
| Namoroka ( | 0.0098 | −0.0087 | 0.0121 | ||||||
| Anjohibe ( | −0.0046 | −0.0078 | 0.0025 | 0.0029 | |||||
| Nosy Be/Nosy Komba ( | 0.0241 | −0.0104 | 0.0029 | 0.0101 | 0.0027 | ||||
| Northern ( | 0.0312 | −0.0152 | 0.0002 | 0.0114 | 0.0026 | −0.0002 | |||
| Grande Comore ( | 0.0968 | 0.1061 | 0.1158 | 0.1096 | 0.105 | 0.1224 | 0.1263 | ||
| Anjouan ( | 0.0957 | 0.1063 | 0.1169 | 0.1092 | 0.1105 | 0.1274 | 0.1264 | 0.0179 | |
| Mohéli ( | 0.1154 | 0.1201 | 0.1273 | 0.1193 | 0.1098 | 0.1312 | 0.1322 | 0.0015 | 0.0053 |
Fig. 3.Mismatch distributions for Rousettus madagascariensis from Madagascar (top) and R. obliviosus from the Comoros (bottom). Empirical estimate of pairwise difference in solid black and simulated pairwise differences with 95% CI under a model of rapid demographic expansion in gray.
Museum number, species, locality, and GenBank numbers of specimens used in this study. Museums holding this material include the Field Museum of Natural History (FMNH) and the Université d'Antananarivo Département de Biologie Animale (UADBA). Abbreviations used in locality names include: PN = Parc National, RNI = Réserve Naturelle Intégrale, RS = Réserve Spéciale, SF = Station Forestière.
| Museum number | Species | Province/ island | Locality | GenBank accession number |
|---|---|---|---|---|
| FMNH 179237 |
| Antsiranana | Andlavakarano (Andavadrano) | GU228684 |
| FMNH 179319 |
| Antsiranana | Andlavakarano (Andavadrano) | GU228685 |
| FMNH 172678 |
| Antsiranana | Antsahabe River, near village of Ankijabe | GU228639 |
| FMNH 172679 |
| Antsiranana | Antsahabe River, near village of Ankijabe | GU228640 |
| FMNH 179320 |
| Antsiranana | Campement Matsaborymadio | GU228686 |
| FMNH 188555 |
| Antsiranana | Nosy Be | GU228693 |
| FMNH 188556 |
| Antsiranana | Nosy Be | GU228694 |
| FMNH 188558 |
| Antsiranana | Nosy Be | GU228695 |
| FMNH 188559 |
| Antsiranana | Nosy Be | GU228696 |
| UADBA SMG-15185 |
| Antsiranana | Nosy Be | GU228697 |
| UADBA SMG-15186 |
| Antsiranana | Nosy Be | GU228698 |
| UADBA SMG-15187 |
| Antsiranana | Nosy Be | GU228699 |
| UADBA SMG-15188 |
| Antsiranana | Nosy Be | GU228700 |
| FMNH 188561 |
| Antsiranana | Nosy Be | GU228701 |
| FMNH 188562 |
| Antsiranana | Nosy Be | GU228702 |
| FMNH 188564 |
| Antsiranana | Nosy Be | GU228703 |
| FMNH 188613 |
| Antsiranana | Nosy Be | GU228704 |
| FMNH 188614 |
| Antsiranana | Nosy Be | GU228705 |
| FMNH 188615 |
| Antsiranana | Nosy Be | GU228706 |
| UADBA SMG-15201 |
| Antsiranana | Nosy Be | GU228707 |
| FMNH 187670 |
| Antsiranana | Nosy Be | GU228597 |
| FMNH 187675 |
| Antsiranana | Nosy Be | GU228598 |
| FMNH 187676 |
| Antsiranana | Nosy Be | GU228599 |
| FMNH 187684 |
| Antsiranana | Nosy Be | GU228600 |
| FMNH 187690 |
| Antsiranana | Nosy Be | GU228601 |
| FMNH 187693 |
| Antsiranana | Nosy Be | GU228602 |
| FMNH 187698 |
| Antsiranana | Nosy Be | GU228603 |
| FMNH 187699 |
| Antsiranana | Nosy Be | GU228604 |
| FMNH 187701 |
| Antsiranana | Nosy Be | GU228605 |
| FMNH 187702 |
| Antsiranana | Nosy Be | GU228606 |
| FMNH 187703 |
| Antsiranana | Nosy Be | GU228607 |
| UADBA SMG-15239 |
| Antsiranana | Nosy Komba | GU228708 |
| UADBA SMG-15240 |
| Antsiranana | Nosy Komba | GU228709 |
| UADBA SMG-15241 |
| Antsiranana | Nosy Komba | GU228710 |
| FMNH 188629 |
| Antsiranana | Nosy Komba | GU228711 |
| FMNH 188630 |
| Antsiranana | Nosy Komba | GU228712 |
| FMNH 188631 |
| Antsiranana | Nosy Komba | GU228713 |
| FMNH 188632 |
| Antsiranana | Nosy Komba | GU228714 |
| UADBA SMG-15250 |
| Antsiranana | Nosy Komba | GU228715 |
| FMNH 188622 |
| Antsiranana | Nosy Komba | GU228716 |
| FMNH 188623 |
| Antsiranana | Nosy Komba | GU228717 |
| FMNH 188624 |
| Antsiranana | Nosy Komba | GU228718 |
| FMNH 178790 |
| Antsiranana | RS d'Analamerana, Grotte de Bazaribe | GU228673 |
| FMNH 178791 |
| Antsiranana | RS d'Analamerana, Grotte de Bazaribe | GU228674 |
| FMNH 178792 |
| Antsiranana | RS d'Analamerana, Grotte de Bazaribe | GU228675 |
| FMNH 178793 |
| Antsiranana | RS d'Analamerana, Grotte de Bazaribe | GU228676 |
| FMNH 178795 |
| Antsiranana | RS d'Analamerana, Grotte de Bazaribe | GU228677 |
| FMNH 178796 |
| Antsiranana | RS d'Analamerana, Grotte de Bazaribe | GU228678 |
| FMNH 178797 |
| Antsiranana | RS d'Analamerana, Grotte de Bazaribe | GU228679 |
| FMNH 154287 |
| Antsiranana | RS d'Anjanaharibe-Sud, Marolakana River | GU228633 |
| FMNH 176268 |
| Antsiranana | RS d'Ankarana, 3.5 km SE Andrafiabe (village) | GU228672 |
| FMNH 176262 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228668 |
| FMNH 176263 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228669 |
| FMNH 176264 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228670 |
| FMNH 176265 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228671 |
| FMNH 172997 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228641 |
| FMNH 172998 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228642 |
| FMNH 172999 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228643 |
| FMNH 173000 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228644 |
| FMNH 173001 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228645 |
| FMNH 177383 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228629 |
| FMNH 177384 |
| Antsiranana | RS d'Ankarana, Grotte des Chauves-souris | GU228630 |
| FMNH 183863 |
| Antsiranana | RS d'Ankarana, Grotte Milaintety | GU228631 |
| FMNH 169703 |
| Antsiranana | RS d'Ankarana, near Andrafiabe Cave | GU228637 |
| FMNH 162064 |
| Fianarantsoa | 9 km NE Ivohibe, 6.5 km ESE Angodongodona | GU228636 |
| FMNH 187600 |
| Fianarantsoa | Ambodiamontana | GU228692 |
| FMNH 151705 |
| Fianarantsoa | PN d'Andringitra | GU228632 |
| FMNH 179289 |
| Mahajanga | Grotte d'Anjohibe | GU228681 |
| FMNH 179290 |
| Mahajanga | Grotte d'Anjohibe | GU228682 |
| FMNH 179294 |
| Mahajanga | Grotte d'Anjohibe | GU228683 |
| FMNH 184008 |
| Mahajanga | Grotte d'Ankelimahogo | GU228687 |
| FMNH 184009 |
| Mahajanga | Grotte d'Ankelimahogo | GU228688 |
| FMNH 184010 |
| Mahajanga | Grotte d'Ankelimahogo | GU228689 |
| FMNH 184011 |
| Mahajanga | Grotte d'Ankelimahogo | GU228690 |
| FMNH 184012 |
| Mahajanga | Grotte d'Ankelimahogo | GU228691 |
| FMNH 169679 |
| Mahajanga | PN de Bemaraha, Foret d'Andranogidro | GU228638 |
| FMNH 175759 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228646 |
| FMNH 175760 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228647 |
| FMNH 175761 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228648 |
| FMNH 175762 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228649 |
| FMNH 175763 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228650 |
| FMNH 175765 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228651 |
| FMNH 175766 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228652 |
| FMNH 175897 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228653 |
| FMNH 175898 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228654 |
| FMNH 175899 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228655 |
| FMNH 175900 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228656 |
| FMNH 175901 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228657 |
| FMNH 175903 |
| Mahajanga | RNI de Namoroka, along Ampandra River | GU228658 |
| FMNH 175767 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228659 |
| FMNH 175768 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228660 |
| FMNH 175769 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228661 |
| FMNH 175770 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228662 |
| FMNH 175771 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228663 |
| FMNH 175772 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228664 |
| FMNH 175773 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228665 |
| FMNH 175774 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228666 |
| FMNH 175775 |
| Mahajanga | RNI de Namoroka, near source of Mandevy River | GU228667 |
| FMNH 187720 |
| Toamasina | Ile Sainte Marie | GU228608 |
| FMNH 187721 |
| Toamasina | Ile Sainte Marie | GU228609 |
| FMNH 187722 |
| Toamasina | Ile Sainte Marie | GU228610 |
| FMNH 187723 |
| Toamasina | Ile Sainte Marie | GU228611 |
| FMNH 187724 |
| Toamasina | Ile Sainte Marie | GU228612 |
| FMNH 187725 |
| Toamasina | Ile Sainte Marie | GU228613 |
| FMNH 187727 |
| Toamasina | Ile Sainte Marie | GU228614 |
| FMNH 187728 |
| Toamasina | Ile Sainte Marie | GU228615 |
| FMNH 187729 |
| Toamasina | Ile Sainte Marie | GU228616 |
| FMNH 187730 |
| Toamasina | Ile Sainte Marie | GU228617 |
| FMNH 187731 |
| Toamasina | Ile Sainte Marie | GU228618 |
| FMNH 187732 |
| Toamasina | Ile Sainte Marie | GU228619 |
| FMNH 187733 |
| Toamasina | Ile Sainte Marie | GU228620 |
| FMNH 187735 |
| Toamasina | Ile Sainte Marie | GU228621 |
| FMNH 187736 |
| Toamasina | Ile Sainte Marie | GU228622 |
| FMNH 187737 |
| Toamasina | Ile Sainte Marie | GU228623 |
| FMNH 187738 |
| Toamasina | He Sainte Marie | GU228624 |
| FMNH 187739 |
| Toamasina | Ile Sainte Marie | GU228625 |
| FMNH 187741 |
| Toamasina | Ile Sainte Marie | GU228626 |
| FMNH 187742 |
| Toamasina | Ile Sainte Marie | GU228627 |
| FMNH 187743 |
| Toamasina | Ile Sainte Marie | GU228628 |
| FMNH 188656 |
| Toamasina | Ile Sainte Marie | GU228719 |
| FMNH 188657 |
| Toamasina | He Sainte Marie | GU228720 |
| FMNH 188658 |
| Toamasina | Ile Sainte Marie | GU228721 |
| FMNH 188659 |
| Toamasina | Ile Sainte Marie | GU228722 |
| FMNH 188660 |
| Toamasina | Ile Sainte Marie | GU228723 |
| FMNH 188661 |
| Toamasina | Ile Sainte Marie | GU228724 |
| FMNH 188662 |
| Toamasina | Ile Sainte Marie | GU228725 |
| FMNH 179197 |
| Toamasina | SF de Tampolo | GU228680 |
| UADBA ZR-157 |
| Toliara | Ambohijanahary Mountain | GU228726 |
| FMNH 194598 |
| Toliara | Ambohijanahary Mountain | GU228727 |
| FMNH 156610 |
| Toliara | PN d'Andohahela, 8 km NW Eminiminy | GU228634 |
| FMNH 156611 |
| Toliara | PN d'Andohahela, 8 km NW Eminiminy | GU228635 |
| FMNH 194230 |
| Grande Comore | Panga Milembeni, near village of Dimadjou | GU228753 |
| FMNH 194231 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228728 |
| FMNH 194232 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228754 |
| FMNH 194233 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228755 |
| FMNH 194234 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228729 |
| FMNH 194236 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228730 |
| FMNH 194238 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228731 |
| FMNH 194240 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228732 |
| FMNH 194241 |
| Grande Comore | Nyamaoui Panga [=Panga Chilamouinani], near Fassi | GU228733 |
| FMNH 194305 |
| Grande Comore | above Boboni, on trail towards La Convalescence | GU228734 |
| FMNH 194306 |
| Grande Comore | above Boboni, on trail towards La Convalescence | GU228735 |
| FMNH 194307 |
| Grande Comore | above Boboni, on trail towards La Convalescence | GU228756 |
| FMNH 194308 |
| Grande Comore | above Boboni, on trail towards La Convalescence | GU228757 |
| FMNH 194313 |
| Anjouan | Grotte de Mangamitsano, between Bambao and Col de Patsi | GU228758 |
| FMNH 194314 |
| Anjouan | Grotte de Mangamitsano, between Bambao and Col de Patsi | GU228759 |
| FMNH 194315 |
| Anjouan | Grotte de Mangamitsano, between Bambao and Col de Patsi | GU228760 |
| FMNH 194316 |
| Anjouan | Grotte de Mangamitsano, between Bambao and Col de Patsi | GU228761 |
| FMNH 194317 |
| Anjouan | Grotte de Mangamitsano, between Bambao and Col de Patsi | GU228736 |
| FMNH 194318 |
| Anjouan | Grotte de Mangamitsano, between Bambao and Col de Patsi | GU228737 |
| FMNH 194320 |
| Anjouan | Grotte de Hapira, near Limbi along Trondroni River | GU228762 |
| FMNH 194322 |
| Anjouan | Grotte de Hapira, near Limbi along Trondroni River | GU228763 |
| FMNH 194438 |
| Anjouan | Lac de Dzialande | GU228738 |
| FMNH 194439 |
| Anjouan | Lac de Dzialande | GU228739 |
| FMNH 194440 |
| Anjouan | Lac de Dzialande | GU228740 |
| FMNH 194441 |
| Anjouan | Lac de Dzialande | GU228741 |
| FMNH 194442 |
| Anjouan | Lac de Dzialande | GU228742 |
| FMNH 194443 |
| Anjouan | Lac de Dzialande | GU228764 |
| FMNH 194444 |
| Anjouan | Lac de Dzialande | GU228765 |
| FMNH 194458 |
| Mohéli | Ouallah I | GU228743 |
| FMNH 194459 |
| Mohéli | Ouallah I | GU228766 |
| FMNH 194460 |
| Mohéli | Ouallah I | GU228744 |
| FMNH 194461 |
| Mohéli | Ouallah I | GU228767 |
| FMNH 194462 |
| Mohéli | Ouallah I | GU228768 |
| FMNH 194463 |
| Mohéli | Ouallah I | GU228769 |
| FMNH 194530 |
| Mohéli | Ouallah I | GU228770 |
| FMNH 194464 |
| Mohéli | near Ouallah I, along Akomodjou River | GU228745 |
| FMNH 194465 |
| Mohéli | near Ouallah I, along Akomodjou River | GU228746 |
| FMNH 194466 |
| Mohéli | near Ouallah I, along Akomodjou River | GU228747 |
| FMNH 194539 |
| Grande Comore | Panga Milembeni, near village of Dimadjou | GU228748 |
| FMNH 194540 |
| Grande Comore | Panga Milembeni, near village of Dimadjou | GU228749 |
| FMNH 194541 |
| Grande Comore | Panga Milembeni, near village of Dimadjou | GU228750 |
| FMNH 194542 |
| Grande Comore | Panga Milembeni, near village of Dimadjou | GU228751 |
| FMNH 194543 |
| Grande Comore | Panga Milembeni, near village of Dimadjou | GU228752 |
| FMNH 194544 |
| Grande Comore | Panga Milembeni, near village of Dimadjou | GU228771 |