| Literature DB >> 32281309 |
Suzan A AlKhater1, Caroline Deswarte2,3, Jean-Laurent Casanova2,3,4,5,6, Jacinta Bustamante2,3,4,7.
Abstract
BACKGROUND: Chronic granulomatous disease (CGD) is a rare primary immunodeficiency disorder (PID) affecting NADPH oxidase activity. The rarest form of the disease is considered to be caused by NCF2 gene bi-allelic variant. Here, we report the clinical and molecular characterization of a patient presenting with early-onset severe disease due to bi-allelic NCF2 variant.Entities:
Keywords: BCG vaccine; NCF2 gene; chronic granulomatous disease; p67phox protein; primary immunodeficiency disorders
Mesh:
Substances:
Year: 2020 PMID: 32281309 PMCID: PMC7284029 DOI: 10.1002/mgg3.1237
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Figure 1Deficiency of p67phox in a child with disseminated BCG infection. (a) Pedigree of kindred, showing the index case, indicated with an arrow, and her brother and parents; each generation is designated by a Roman numeral (I‐II). (b) Abdominal CT scan showing hepatosplenomegaly, intra‐abdominal calcified mesenteric, and para‐aortic lymph nodes. (c) Anteroposterior radiograph of the patient's left knee demonstrating a well‐circumscribed lucent lesion in the tibial metaphysis and posterior cortical disruption. (d) Electropherogram showing the position of the variant (c.290C > A; p.Ala97Asp; NM_001127651.2), in the NCF2 gene in a healthy control and the family members
Laboratory data
| Immunological workup | Results | Reference range |
|---|---|---|
| Hemoglobin (g/dl) | 10.5 | 11.3–14.1 |
| White blood cells/mm3 | 51,000 | 5,000–17,000 |
| Neutrophils/mm3 | 29,070 | 1,000–6,000 |
| Lymphocytes/mm3 | 16,830 | 4,000–12,000 |
| Monocytes/mm3 | 5,100 | 200–1,200 |
| Platelets/mm3 | 722,000 | 140–400 |
| Immunoglobulin levels | ||
| IgA (mg/dl) | 245 | 20–100 |
| IgG (mg/dl) | 1,539 | 453–916 |
| IgM (mg/dl) | 243 | 19–146 |
| IgE (IU/ml) | 53.1 | ≤97 |
| Lymphocyte populations | ||
| CD3/mm3 | 4,298 | 2,200–4,100 |
| CD4/mm3 | 3,035 | 1,400–2,800 |
| CD8/mm3 | 1,235 | 800–1,800 |
| CD19/mm3 | 2,565 | 700–1,600 |
| CD65/16/mm3 | 928 | 200–600 |
| Granulocyte expression | ||
| CD11b | 100% | |
| CD18 | 100% | |
| CD15s | 96% | |
Published NCF2 variants and the clinical phenotypes of patients with CGD
| Publication | Nucleotide change (amino acid or mRNA change) | Age at diagnosis | Protein function | Clinical symptoms and outcome |
|---|---|---|---|---|
| El Kares et al. ( | c.1256A>T/c.1256A>T (p.Asn419Ile/p.Asn419Ile) | 10 months | Not reported | CGD: not further detailed |
| c.257+2T>C/ c.257+2T>C | 19 months | |||
| Kannengiesser et al. ( | c.364+1G>A/c.364+1G>A | Not reported | p67null (Western blot) | CGD: recurrent life‐threatening bacterial and fungal infections |
| c.364_366+2delGAGGT/ c.364_366+2delGAGGT | ||||
| c.866_867delGT/c.866_867delGT (p.Val267Leufs*8/p.Val267Leufs*8) | ||||
| Koker et al. ( | c.229C>T/c.229C>T (p.Arg77*/p.Arg77*) | Not reported |
p67null (Western blot) | CGD: recurrent life‐threatening bacterial and fungal infections |
| c.279C>G/c.279C>G (p.Asp93Glu/p.Asp93Glu) | ||||
| c.304C>T/c.304C>T (p.Arg102*/p.Arg102*) | ||||
| c.605C>T (p.Ala202Val/p.Ala202Val) | Residual oxidase activity | CGD: mild clinical manifestations | ||
| Bakri et al. ( | c.1169_1173del/ c.1169_1173del | 9 years | p67null (Western blot) | Multifocal osteomyelitis, bacteremia ( |
| 5 months | Peritonitis, hepatomegaly, perianal abscesses, lymphadenitis | |||
| 5 years | Granuloma in lung, died at age 6 | |||
| 10 months | Died from sepsis ( | |||
| Gentsch et al. ( | c.366+2401_502del1380/0.366+2401_502del1380 (p.Val123_Trp167del/p.Val123_Trp167del) | Not reported | Inactive, unstable p67 | CGD: recurrent life‐threatening bacterial and fungal infections |
| Teimourian et al. ( | (p.Met1_Lys58del/ p.Met1_Lys58del) | 2 years |
NADPH oxidase inactive | CGD: young age at presentation, severe disease |
| c.196C>T/c196C>T (p.Arg66*/p.Arg66*) | ||||
| Badalzadeh et al. ( | c.304C>T/c.304C>T (p.Arg102*/p.Arg102*) | 20 months |
p67null (Western blot) | CGD: BCG‐osis, recurrent pneumonia, hepatomegaly, hepatitis, and meningitis |
| (p.Leu346fs*380/p.Leu346fs*380) | 2 years | CGD: lymph node abscesses | ||
| 4.5 months | CGD: arthritis, severe diarrhea | |||
| Δ exon 2/ Δ exon 2 (copy number variation) | 7 months | CGD: pneumonia, pulmonary abscess, genital and perianal abscess, inguinal lymphadenopathy, hepatosplenomegaly | ||
| Martel et al. ( | c.29G>A/c.296G>A (p.Trp10*/p.Trp10*) | 3 months | p67null (Western blot) | CGD: severe and early presentation, splenic abscess, pneumonia |
| Roesler et al. ( | c.1000+2T>G/c.1000+2T>G | 58 years | DHR test, residual NADPH oxidase activity | CGD: delayed onset, pulmonary aspergillosis, pulmonary fistula |
| 53 years | CGD: delayed onset, skin abscess, hepatic abscess, fungal pneumonia | |||
| Raptaki et al. ( | c.279C>G/c.279C>G (p.Asp93Glu/p.Asp93Glu) | 1.8 years |
p67null (Western blot) | CGD: otitis media, candida, lymphadenitis |
| c.502−1G>T/c.502−1G>T | 2.5 years | CGD: pulmonary aspergillosis, salmonella gastroenteritis | ||
| c.502−1G>T/c.502−1G>T | 3 years | CGD: pulmonary aspergillosis, hepatic abscess, vertebral osteomyelitis, lymphadenitis, septicemia, deceased at age 14 years | ||
| Koker et al. ( | c.299C>T/c.299C>T (p.Arg77*/p.Arg77*) | <1, 2 years |
p67null (Western blot) | Chronic idiopathic thrombocytopenic purpura, Bechet disease, seborrheic dermatitis, stomatitis, gingivitis, and pericardial effusion. A total of three patients died from sepsis caused by |
| c.279C>G/c.366+1G>C/ c.279C>G/c.366+1G>C | 4, 2, 3, <1, 17 years | |||
| c.304C>T/c.304C>T (p.Arg102*/p.Arg102*) | 5 years | |||
| c.409T>A/ c.409T>A (p.Trp137Arg/ p.Trp137Arg) | 2 years | |||
| c.410G>A/ c.410G>A (p.Trp137*/p.Trp137*) | 5, <1 year | |||
| c.767_768dupAA/ c.767_768dupAA (p.Glu257Lysfs*15/ p.Glu257Lysfs*15) | 1 years | |||
| c.605C>T/ c.605C>T (p.Ala202Val/ p.Ala202Val) | 2 years | DHR residual oxidase activity | CGD: mild symptoms of Familial Mediterranean Fever and uveitis | |
| Baba et al. ( | c.257+1G>A/ c.257+1G>A | 5.5 years | p67null (Western blot) | CGD: pneumonia, diarrhea, macrophage activation syndrome, bronchiectasis, lymphadenopathy, infections with |
| 0.67 years | Pneumonia, septicemia, deceased | |||
| 0.25 years | Lymphadenopathy, infections with | |||
| Roos et al. ( | c.605C>T/ c.605C>T (p.Ala202Val/ p.Ala202Val) | 17 years | Residual oxidase activity | CGD: mild, recurrent abscess controlled by antibiotics, discoid lupus‐like rash, recurrent keratitis, conjunctival granulomata |
| Diagnosed at birth | Recurrent oral ulceration, leg ulcers, folliculitis and skin abscesses, short period of diarrhea, and rectal bleeding | |||
| 8 years | Pustular and eczematous lesions of the scalp skin, recurrent chorioretinitis, severe uveitis | |||
| Chou et al. ( | c.1000+1G>A/ c.1000+1G>A | Adult | Residual oxidase activity | SLE: duodenitis, pulmonary infection |
| Ben‐Farhat et al. ( | c.257+2T>C/ c.257+2T>C | 2–12 years ( | p67null (Western blot) | CGD: recurrent life‐threatening bacterial and fungal infections. A total of 9 of 11 patients died mostly from respiratory illnesses |
| Wu et al. ( | c.550C>T/ c.550C>T (p.Arg184*/ p.Arg184*) | 1.5 months |
p67null (Western blot) | Pneumonia, skin abscess, mycobacterial infections due to BGC |
| c.137T>G/ c.137T>G (p.Met46Arg/ p.Met46Arg) | ||||
| c.1130_1135delACATGG/ c.1130_1135delACATGG (p.Asp377 Met37del/ p.Asp377 Met37del) | ||||
| Vignesh et al. ( | (p.Thr279fs*/p.Thr279fs*) |
Early childhood ( |
p67null (Western blot) |
All three patients had colitis, suppurative lymphadenitis, failure to thrive, pneumonia Lung abscess in one patient ( |
| c.1179–2A>T/c.1099C>T (p.Q367*) | ||||
| AlKhater ( | c.855_856del/ c.855_856del (p.Thr285fs*/ p.Thr285fs*) | 3 years |
DHR test, NADPH oxidase inactive | CGD: very‐early‐onset colitis, perianal abscesses ( |