Literature DB >> 32273741

SLC30A8, CDKAL1, TCF7L2, KCNQ1 and IGF2BP2 are Associated with Type 2 Diabetes Mellitus in Iranian Patients.

Kazem Vatankhah Yazdi1, Seyed Mehdi Kalantar1, Massoud Houshmand2,3, Masoud Rahmanian4, Masoud Reza Manaviat5, Mohammad Reza Jahani6, Behnam Kamalidehghan2,7, Amir Almasi-Hashiani8.   

Abstract

BACKGROUND: Type 2 diabetes mellitus (T2DM) is a serious public health issue with significantly increasing rates across the world. The genome-wide association studies (GWAS) have previously manifested involved genes that remarkably enhance the risk of T2DM. In this study, the association of common variants with T2DM risk has been identified among Iranian population from Tehran province of Iran.
METHODS: Here, the association of refSNPs with T2DM risk was examined on peripheral blood samples of 268 individuals including control group and patients with T2DM using the tetra amplification refractory mutation system (ARMS) methods and direct genomic DNA sequencing.
RESULTS: Our study demonstrated that SLC30A8 rs13266634 (T/C), CDKAL1 rs10946398 (A/C), TCF7L2 rs7903146 (C/T), KCNQ1 rs2237892 (T/C), and IGF2BP2 rs1470579 (A/C) polymorphisms are significantly associated with type 2 diabetes, but no significant association was identified for FTO rs8050136 and MTNR1B rs10830963 polymorphisms.
CONCLUSION: The prediction of refSNPs is remarkably needed for pharmacogenetics and pharmacogenomic approaches, in which the information would be useful for clinicians to optimize therapeutic strategies and adverse drug reactions in patients with T2DM.
© 2020 Vatankhah Yazdi et al.

Entities:  

Keywords:  ARMS; GWAS; Iranian populations; T2DM; the genome-wide association studies; the tetra amplification refractory mutation system; type 2 diabetes mellitus

Year:  2020        PMID: 32273741      PMCID: PMC7102914          DOI: 10.2147/DMSO.S225968

Source DB:  PubMed          Journal:  Diabetes Metab Syndr Obes        ISSN: 1178-7007            Impact factor:   3.168


Introduction

Type 2 diabetes mellitus (T2DM) is a multifactorial and complex metabolic disorder, characterized by chronic hyperglycemia due to impairment in insulin secretion and sensitivity.1 The frequency of T2DM is enhancing gradually due to environmental factors and interplay of different variation in multiple genes.2 The World Human Organization (WHO) estimated that the total number of individuals with T2DM will reach to 366 million throughout the world by 2030.3 The hallmark factors, influencing the prevalence of diabetes, include age, gender, ethnicity, lifestyle, and obesity,4 in which the prevalence of T2DM in Iranian population is approximately 7.7%.5 There are several important genetic factors in T2DM including high incidence of diabetes among monozygotic twins compare to dizygotic twins, familial history, ethnicity and migration studies.6,7 IGF2BP2 is extremely expressed in pancreatic islets and binds to IGF-2 (insulin-like growth factor 2) that plays remarkable roles in localization, stability and translation of RNA.8–10 KCNQ1 (potassium voltage-gated channel KQT-like subfamily, member 1) gene is expressed in pancreatic islets11,12 and plays a central role for repolarization of the cardiac action potential and transportation of water and salt in epithelial tissues.13 Mutations in KCNQ1 gene are involved in deafness and long QT syndrome.14 Blockade of the channel with KCNQ1 inhibitors 293B resulting in insulin secretion,11 indicating that KCNQ1 channels may play functionally significant roles in regulation of insulin secretion. Previous studies demonstrated that TCF7L2 is an important regulator of insulin production and is also expressed in pancreatic islets.15 TCF7L2 plays a key role in expression and subsequent conversion of proinsulin into mature insulin through various TCF7L2-target genes and downstream regulatory signaling pathways.15 Additionally, TCF7L2 may also affect the insulin clearance and insulin sensitivity.15,16 The FTO rs8050136 polymorphism is associated with high risk of T2D.17–23 The FTO is a 2-oxoglutarate (2-OG) Fe(II) dependent demethylase. Previous studies demonstrated a potential role of FTO in nucleic acid repair.24 According to the previous studies, the exact molecular signaling pathways of FTO involved in human adiposity, cancer, metabolic disorders, obesity and T2D remain largely unknown.18,25,26 The MTNR1B is a new susceptibility gene involved in the regulation of glucose homeostasis and T2DM, encoding the melatonin receptor MT2, which is expressed in different tissues including pancreatic islets.27–30 The rs13266634 (C/T) in the SLC30A8 gene is associated with increasing risk of T2D, encoding zinc transporter 8, which is primarily expressed in pancreatic β-cells. Additionally, the major C-allele of rs13266634 is associated with a lower early insulin response to glucose and a high risk of T2D.31,32 Due to the limited number of controlled trials, there is to date no overall strong evidence supporting the theory that zinc supplementation may lower the risk of T2D in humans.33 Previous studies demonstrated an interaction between plasma zinc levels and rs13266634 on T2D risk.34 Cyclin-dependent kinase 5 regulatory subunit-associated protein 1-like (CDKAL1) gene, located in 6p22.3, is associated with T2DM.35 CDKAL1 gene encodes tRNA decoration enzyme, namely methyl transfer enzyme which is involved in 2-methylthio-N6-threonylcarbamoyladenosine synthesis of the 37th base of tRNA Lys(UUU).36,37 Zinc is an essential element for insulin secretion and storage.38–40 Pancreatic beta cells contain the highest level of Zinc compared to other cells in the human body.41 The genome-wide association studies (GWAS) have extended the progress and distribution of different genetic components in type 2 diabetes.9 Today, there are at least 20 loci that are associated with T2DM risk, in which the SLC30A8 (rs13266634), CDKN2A/2B (rs10811661), HHEX (rs1111875) and TCF7L2 (rs7903146) play important roles in the risk of T2DM in European Caucasians.9,31,42,43 In this study, the association of different refSNPs with T2DM was investigated for the prediction of T2DM risk among the Iranian population.

Materials and Methods

Specimen Collection and Ethical Statement

In this study, 268 peripheral blood samples, including 106 healthy and unrelated donors and 162 patients with T2DM, were obtained from Tehran Taban Health Care and Diabetes Clinic (TTHCDC) and Aramesh Genetic and Pathobiology Lab from Tehran. The whole peripheral blood samples collected in tubes containing ethylenediamine tetraacetic acid (EDTA) in a final volume of 2 mL. The written informed consent for participating in the study and allowing the publishing of information for genetic analysis were obtained from individuals. Approval to conduct this study was granted by the medical ethics committee of Shahid Sadoughi University of Medical Sciences and Health Services (approval number: IR.SSU.MEDICINE.REC.1395.90) in accordance with the Declaration of Helsinki. The inclusion criteria were patients older than 40 years who had lived with type 2 diabetes for more than 10 years. The exclusion Criteria were: having chronic diseases such as heart failure, chronic kidney disease, chronic lung disease, diabetic foot or limb amputation, and moderate to severe retinopathy. The exclusion criteria in the control group were chronic disease or fasting blood sugar>100 mg/dl.

DNA Extraction Protocol

The DNA from whole peripheral blood samples was extracted using PrimePrep Genomic DNA extraction kit (GeNet Bio). The quantity and quality of extracted DNA was measured using Nanodrop, and then run on a 1% agarose gel electrophoresis.

Primer Design

The forward and reverse primers for identification of genes were designed using the online Primer 1 program, available from html/primer1.html, developed by Ye and colleagues in 2001. The details of primers were checked using BLAST through . The two special set primers were designed by using the primer1 program () developed by Ye et al (2001). The specificity of primers and their melting temperatures were checked using BLAST (). The details of the primers are summarized in Table 1.
Table 1

Represents List of Forward and Reverse Primers (Inner and Outer) Applied for Detection of SNPs

SNP IDForward and Reverse Primer Sequences (Outer & Inner)Primer Tm (C°)Product Size(bp)
1470579FO5ʹ-ACA GAA ACA CAA TAA GAT CAT CAC AT-3’57.43FO-RO391
RO5ʹ-AAA TTT TTT ATG GAC ACT GAA GGT C-3’56.51FO-RI205
FI5ʹ-ATC ATT AGA TAA GAT CCA TAC GAG CTA-3’57.37FI-RO233
RI5ʹ-CTT TTC TTG ATA GGC AGG GTG-3’56.59
2237892FO5ʹ-CTG TGG GTA CAC AGC TTC CCT-3’61.72FO-RO467
RO5ʹ-CCT GGG TCA TCA GAC TAG GGT AG-3’61.01FO-RI267
FI5ʹ-GTC ACA GGA CTT TGC CAA CC-3’59.33FI-RO239
RI5ʹ-TTT CTA GGC CCC TCA CCA CA-3’60.47
7903146FO5ʹ-TTT TTC ACA TGT GAA GAC ATA CAC-3’56.15FO-RO429
RO5ʹ-TTT ATA GCG AAG AGA TGA AAT GTA G-3’55.10FO-RI269
FI5ʹ-ATT AGA GAG CTA AGC ACT TTT TAG AGA T-3’58.59FI-RO212
RI5ʹ-CTC ATA CGG CAA TTA AAT TAT AGA G-3’54.04
8050136FO5ʹ-CCA TAC CAA CCA AGG TCC T-3’56.29FO-RO388
RO5ʹ-CAC ACC AAG ATG GTC ATG TC-3’56.43FO-RI237
FI5ʹ-GTT GCC CAC TGT GGC AGT A-3’60.23FI-RO189
RI5ʹ-AAC CAC AGG CTC AGA TAC TG-3’56.93
10830963FO5ʹ-GGT TAA AGA GGC TGT CTG GGA GG-3’62.51FO-RO421
RO5ʹ-AGC CTT TGT TCA GAA CCA TGC TG-3’61.87FO-RI254
FI5ʹ-AGT GAT GCT AAG AAT TCA CAC CAT GTG-3’61.97FI-RO216
RI5ʹ-GGC AGT TAC TGG TTC TGG ATT GG-3’61.43
10946398FO5ʹ-CAG GAT CTT GTG CTC CTC AC-3’57.98FO-RO424
RO5ʹ-CCA ACA GCA AGC AGT TGA TT-3’57.19FO-RI255
FI5ʹ-GGA AAA GGG TTT AGT ATC GCT C-3’55.67FI-RO214
RI5ʹ-GAT GAC TTG ATG CAA TGA CAG TAT-3’57.38
13266634FO5ʹ-CTG CTG ATA GCA TTT GGG ACA GG-3’61.55FO-RO826
RO5ʹ-CCA ATT GAT TGA TGG ATC TCA GTG C-3’60.51FO-RI520
FI5ʹ-GCT TCT TTA TCA ACA GCA GCC AGC T-3’64.04FI-RO350
RI5ʹ-CGA ACC ACT TGG CTG TCC CG-3ʹ63.66
Represents List of Forward and Reverse Primers (Inner and Outer) Applied for Detection of SNPs

Procedure of Tetra Primer ARMS-PCR

Essential keys for optimization of tetra ARMS are ration determination of outer and inner primers and annealing temperature. The unspecific bands were solved using gradient PCR system and optimization of outer and inner primer concentrations. The PCR reaction was performed in a final volume of 25 ul containing 1 μL Mg, 2.5 μL Buffer, 0.5 μL dNTP, 0.2 μL Taq polymerase, 1μL forward outer primer, 1 μL reverse outer primer, 2 μL forward inner primer, 2 reverse inner primer,1 μL DNA and 13.8 μL H2O. The DNA amplification was carried out using ARMS PCR for SNPs. The details of PCR reaction were as follows: 95°C for 5 min for cycle preparation, 30 cycles of denaturation at (95°C for 30 sec, annealing for 30 sec with different temperatures), polymerization at 72°C for 30 sec, and final extension at 72°C for 5 min with 1 cycle. The amplified fragment was confirmed and analyzed on 1.5% agarose gel (Figure 1).
Figure 1

ARMS-PCR analysis of the (A) rs2237892 C > T, (B) rs1470579 C > A, (C) rs10946398 C > A, (D) rs8050136 A>C, (E) rs10830963 C > G, (F) rs13266634 C > T and (G) rs7903146 T > C on 1.5% agarose gel. Note: Lanes 1, 2, 3 and 4 represent fo-ro/fo-ri/fi-ro, fo-ro/fo-ri, fo-ro/fi-ro and DNA molecular marker, respectively.

ARMS-PCR analysis of the (A) rs2237892 C > T, (B) rs1470579 C > A, (C) rs10946398 C > A, (D) rs8050136 A>C, (E) rs10830963 C > G, (F) rs13266634 C > T and (G) rs7903146 T > C on 1.5% agarose gel. Note: Lanes 1, 2, 3 and 4 represent fo-ro/fo-ri/fi-ro, fo-ro/fo-ri, fo-ro/fi-ro and DNA molecular marker, respectively.

Single Nucleotide Polymorphisms (SNP) Identification

In this study, the SNPs were sequenced and the results were then identified using the National Center for Biotechnology Information (NCBI) database, available at .

Sequencing Analysis

The double-stranded DNA of PCR products was examined using an automated ABI sequencing machine (ABI 3130 Genetic Analyzer, Baghiyatallah Hospital, Tehran-Iran). The DNA fragments were confirmed for any nucleotide variation and were then analyzed using Finch TV software (; PerkinElmer Inc., Waltham, MA, USA) (Figure 2).
Figure 2

PCR-sequencing of (A) rs2237892 C > T, (B) rs1470579 C > A, (C) rs10946398 C > A, (D) rs8050136 A>C, (E) rs10830963 C > G, (F) rs13266634 C > T and (G) rs7903146 T > C. The highlighted blue area marks the polymorphisms.

PCR-sequencing of (A) rs2237892 C > T, (B) rs1470579 C > A, (C) rs10946398 C > A, (D) rs8050136 A>C, (E) rs10830963 C > G, (F) rs13266634 C > T and (G) rs7903146 T > C. The highlighted blue area marks the polymorphisms.

Statistical Analysis

The odd ratios (OR) and 95% confidence intervals (CI) are used to determine the significant relationship of SNPs with T2DM. The Chi-square or Fisher exact test is used to analyze the results using STATA (V8) software. The p-values<0.05 is regarded as statistically significant.

Results

The clinical and biomedical characteristic of patients with T2DM were compared with control groups and the results are summarized in Table 2. This study demonstrated that there is a significant correlation (p<0.05) between T2DM patients and control groups with certain clinical parameters, including BMI, SBP, DBP, LDL, HDL, TG, 2hpp, FBS and HbA1c.
Table 2

The Clinical and Biomedical Characteristics of Individuals in This Study

Clinical ParametersControls (n=106)T2DM Subjects (n=162)P-value
Age65.5±7.365±7.50.64
BMI (Body Mass Index)23.07±1.0324.00±1.23<0.001*
SBP (Systolic Blood Pressure)120.36±4.23130.03±7.43<0.001*
DBP (Diastolic Blood Pressure)84.89±3.0188.75±4.59<0.001*
LDL (Low-Density Lipoprotein)110.97±13.00129.83±9.06<0.001*
HDL (High-Density Lipoprotein)46.07±4.1644.28±4.290.002*
TG (Triglyceride)118.64±12.11176.69±11.59<0.001*
2hpp (Two-Hour Postprandial Glucose)121.56±3.60235.35±12.97<0.001*
FBS (Fasting Blood Sugar)87.32±4.35165.20±22.51<0.001*
HbA1c (Glycated hemoglobin)5.40±0.168.34±0.49<0.001*

Notes: Data are mean±S.D values; *Statistically significant.

Abbreviations: BMI, Body Mass Index; SBP, Systolic Blood Pressure; DBP, Diastolic Blood Pressure; LDL, Low-Density Lipoprotein; TG, Triglyceride; 2hpp, Two-Hour Postprandial Glucose; FBS, Fasting Blood Sugar; HbA1c, Hemoglobin A1c.

The Clinical and Biomedical Characteristics of Individuals in This Study Notes: Data are mean±S.D values; *Statistically significant. Abbreviations: BMI, Body Mass Index; SBP, Systolic Blood Pressure; DBP, Diastolic Blood Pressure; LDL, Low-Density Lipoprotein; TG, Triglyceride; 2hpp, Two-Hour Postprandial Glucose; FBS, Fasting Blood Sugar; HbA1c, Hemoglobin A1c. In our study, genotypic frequency of SNPs variants was analyzed from the blood samples of 162 T2DM patients and 106 non-diabetic individuals from  the Iranian population. The genotypic frequencies of the homozygous (C/C), heterozygous (C/T), and homozygous (T/T) variants of the rs13266634 (T/C) significantly (P value<0.001) observed in 16 (9.88%), 64 (39.51%), and 82 (50.62%) of T2DM patients and 5 (4.72%), 23 (21.70%), and 78 (73.58. %) of the control groups, respectively (Table 3). Additionally, the odd ratio of T2DM patients with C/T and C/C genotype was 2.64 and 3.04, respectively. However, patients with C/T (P=0.001) and C/C (P=0.038) genotypes significantly indicated high risk of T2DM in comparison with T/T genotype. The genotypic frequencies of homozygous (A/A), heterozygous (A/C), and homozygous (C/C) variants of the rs10946398 (A/C) significantly (P value<0.001) observed in 31 (19.14%), 104 (64.20%), and 27 (16.67%) of T2DM patients and 46 (43.40%), 50 (47.17%), and 10 (9.43%) of the control groups. Additionally, the odd ratio of T2DM patients with A/C and C/C genotypes were 3.08 and 4.0, respectively. However, patients with C/C and A/C genotypes significantly (P=0.001) indicated high risk of T2DM in comparison with A/A genotype (Tables 3 and 4).
Table 3

The Genotypic Frequency of Polymorphisms Between T2DM and Control Groups

SNPControln (%)T2DMn (%)p-value
rs1470579 IGF2BP2AA55 (51.89%)67 (41.36%)0.001*
CC11 (10.38%)55 (33.95%)
AC40 (37.74%)40 (24.69%)
rs2237892 KCNQ1TT6 (5.66%)1 (0.62%)0.002*
CC85 (80.19%)152 (93.83%)
CT15 (14.15%)9 (5.56%)
rs7903146 TCF7L2CC51 (48.11%)26 (16.05%)0.001*
CT39 (36.79%)76 (46.91%)
TT16 (15.09%)60 (37.04%)
rs8050136 FTOCC25 (23.58%)42 (25.93%)0.132
AA60 (56.60%)73 (45.06%)
AC21 (19.81%)47 (29.01%)
rs10830963 MTNR1BCC52 (49.06%)58 (35.80%)0.079
CG44 (41.51%)80 (49.38%)
GG10 (9.43%)24 (14.81%)
rs10946398 CDKAL1AA46 (43.40%)31 (19.14%)0.001*
CC10 (9.43%)27 (16.67%)
AC50 (47.17%)104 (64.20%)
rs13266634SLC30A8TT78 (73.58%)82 (50.62%)0.001*
CC5 (4.72%)16 (9.88%)
CT23 (21.70%)64 (39.51%)

Note: *statistically significant.

Table 4

The Genotypic Frequency of Polymorphisms Between T2DM and Control Groups with Odds Ratio

SNPControln (%)T2DMn (%)Odds Ratioa(95% CI)p-value
rs1470579 IGF2BP2AA55 (51.89%)67 (41.36%)Ref.-
CC11 (10.38%)55 (33.95%)4.1 (1.96–8.59)0.001*
AC40 (37.74%)40 (24.69%)0.82 (0.46–1.44)0.494
rs2237892 KCNQ1TT6 (5.66%)1 (0.62%)Ref.-
CC85 (80.19%)152 (93.83%)10.79 (1.27–90.6)0.029*
CT15 (14.15%)9 (5.56%)3.6 (0.37–34.93)0.269
rs7903146 TCF7L2CC51 (48.11%)26 (16.05%)Ref.-
CT39 (36.79%)76 (46.91%)3.82 (2.07–7.03)0.001*
TT16 (15.09%)60 (37.04%)7.35 (3.55–15.2)0.001*
rs8050136 FTOCC25 (23.58%)42 (25.93%)Ref.-
AA60 (56.60%)73 (45.06%)0.72 (0.39–1.32)0.293
AC21 (19.81%)47 (29.01%)1.33 (0.65–2.72)0.431
rs10830963 MTNR1BCC52 (49.06%)58 (35.80%)Ref.-
CG44 (41.51%)80 (49.38%)1.63 (0.96–2.75)0.068
GG10 (9.43%)24 (14.81%)2.15 (0.94–4.92)0.069
rs10946398 CDKAL1AA46 (43.40%)31 (19.14%)Ref.-
CC10 (9.43%)27 (16.67%)4.0 (1.70–9.43)0.001*
AC50 (47.17%)104 (64.20%)3.08 (1.75–5.43)0.001*
rs13266634 SLC30A8TT78 (73.58%)82 (50.62%)Ref.-
CC5 (4.72%)16 (9.88%)3.04 (1.06–8.70)0.038*
CT23 (21.70%)64 (39.51%)2.64 (1.49–4.67)0.001*

Notes: aCrude odds ratio (95% CI); *statistically significant.

The Genotypic Frequency of Polymorphisms Between T2DM and Control Groups Note: *statistically significant. The Genotypic Frequency of Polymorphisms Between T2DM and Control Groups with Odds Ratio Notes: aCrude odds ratio (95% CI); *statistically significant. The genotypic frequencies of homozygous (C/C), heterozygous (C/T), and homozygous (T/T) variants of the rs7903146 (C/T) significantly (P value<0.001) observed in 26 (16.05%), 76 (46.91%), and 60 (37.04%) of T2DM patients and 51 (48.11%), 39 (36.79%), and 16 (15.09%) of control groups. Additionally, the odd ratio of T2DM patients with T/T and C/T genotype were 7.35 and 3.82, respectively. However, patients with T/T and C/T genotypes (P=0.001) indicated high risk in comparison with C/C genotypes (Tables 3 and 4). The genotypic frequencies of homozygous (A/A), heterozygous (A/C), and homozygous (C/C) variants of the rs1470579 (A/C) significantly (P value<0.001) observed in 67 (41.36%), 40 (24.69%), and 55 (33.95%) of T2DM patients and 55 (51.89%), 40 (37.74%), and 11 (10.38%) of the control groups. Additionally, the A/C genotype was evaluated using odd ratio (OR: 4.1) and it was significantly high (P=0.001) in T2DM patients in comparison with A/A genotype (Tables 3 and 4). The genotypic frequencies of homozygous (T/T), heterozygous (C/T), and homozygous (C/C) variants of the rs2237892 (C/T) significantly (P value=0.002) observed in 1 (0.62%), 9 (5.56%), and 152 (93.83%) of T2DM patients and 6 (5.66%), 15 (14.15%), and 85 (80.19%) of the control groups. Additionally, C/C genotype was evaluated using odd ratio (OR: 10.7) and it was significantly high (P=0.029) in T2DM patients in comparison with the T/T genotype (Tables 3 and 4). Additionally, there is no significant association of rs8050136 FTO (p value = 0.132) and rs10830963 MTNR1B (p value = 0.079) polymorphisms between T2DM patients and control groups (Tables 3 and 4).

Discussion

Type 2 diabetes mellitus (T2DM) is a complicated multi-gene or polygenic disorder involved with unknown contributing genes that increase the risk of T2DM in susceptible individuals. Recently, 16 novel susceptible gene loci for T2DM were identified,44 but the impact of TCF7L2 is much higher in comparison with other confirmed T2D gene candidate.45 The interaction of multiple genes and genetic and environmental factors lead to hyperglycemia due to impaired insulin function or secretion. Therefore, different strategies have been attempted to identify involved genes with T2DM. However, investigation in different ethnicities and geographical region demonstrated different results across the world. SNPs in SLC30A8 (rs13266634), CDKAL1 rs10946398, TCF7L2 rs7903146, KCNQ1 rs2237892, IGF2BP2 rs1470579 and MTNR1B rs10830963 were reported to be associated with T2DM in different studies.46–49 Our study demonstrated that SLC30A8 rs13266634 (T/C), CDKAL1 rs10946398 (A/C), TCF7L2 rs7903146 (C/T),KCNQ1 rs2237892 (T/C), and IGF2BP2 rs1470579 (A/C) polymorphisms are significantly in association with type 2 diabetes, but no significant association was identified for FTO rs8050136 and MTNR1B rs10830963 polymorphisms in present study. Of 31 provinces in Iran, studies on only two provinces, Gorgan50 and Kurdish,51 revealed that the frequency of the TCF7L2 rs7903146 polymorphism was significant, which is in agreement with present study. In contrast to our study, a lack of remarkable association between TCF7L2 rs7903146 polymorphism and T2D was reported among the Arabian Emirates52 and Saudi Arab population.53 Here, the association of various SNPs with T2DM risk was investigated among Iranian individuals. However, the limitation of our study was to demonstrate the association of mortality and clinical complications with T2DM. The fundamental mechanisms, by which genetic variations within the intron of the TCF7L2 gene confers susceptibility to T2DM, remain to be elucidated. However, a study indicated that genetic variations around 3ʹend of the TCF&L2 gene may affect the function of TCF7L2, due to regulation of alternative splicing.54 The lack of statistically significant differences in the allelic and genotypic frequencies of FTO rs8050136 and MTNR1B rs10830963 polymorphisms between T2DM and control groups may be partially interpreted due to the heterogeneity of the individual’s ethnicity. It is accepted that approximately 14% of the between-studies variances may be attributed to ethnicity differences.55

Conclusion

In conclusion, our study indicated the association of well-established common variants of SLC30A8 rs13266634 (T/C), CDKAL1 rs10946398 (A/C), TCF7L2 rs7903146 (C/T), KCNQ1 rs2237892 (T/C), and IGF2BP2 rs1470579 (A/C) with type 2 diabetes among Iranian population from Tehran. Our study indicated the remarkable presence of the rs13266634, 10946398, 7903146, 2237892 and 1470579 polymorphisms in Iranian population, suggesting susceptibility of individuals to T2DM which may lead to identification of individuals with high risk for developing T2DM. Additionally, this study demonstrated the absence of the common variant FTO rs8050136 (C/A) among Iranian population. It is clinically important to manifest individuals for pharmacogenetics and pharmacogenomics approaches and prevention of harmful complication of this silent disease and adverse drug reactions. Therefore, identification of involved polymorphism analysis improves individual lifestyle and is a helpful tool toward personalized medicine and avoidance of the harmful effects of drugs.
  55 in total

Review 1.  Genetic dissection of type 2 diabetes.

Authors:  Martin Ridderstråle; Leif Groop
Journal:  Mol Cell Endocrinol       Date:  2008-10-19       Impact factor: 4.102

2.  Association of melatonin &MTNR1B variants with type 2 diabetes in Gujarat population.

Authors:  Roma Patel; Nirali Rathwa; Sayantani Pramanik Palit; A V Ramachandran; Rasheedunnisa Begum
Journal:  Biomed Pharmacother       Date:  2018-04-24       Impact factor: 6.529

3.  Association between rs13266634 C/T polymorphisms of solute carrier family 30 member 8 (SLC30A8) and type 2 diabetes, impaired glucose tolerance, type 1 diabetes--a meta-analysis.

Authors:  Kuanfeng Xu; Min Zha; Xiaohong Wu; Zhangbin Yu; Rongbin Yu; Xinyu Xu; Heng Chen; Tao Yang
Journal:  Diabetes Res Clin Pract       Date:  2010-12-04       Impact factor: 5.602

4.  Association study of the genetic polymorphisms of the transcription factor 7-like 2 (TCF7L2) gene and type 2 diabetes in the Chinese population.

Authors:  Yi-Cheng Chang; Tien-Jyun Chang; Yi-Der Jiang; Shan-Shan Kuo; Kuan-Ching Lee; Ken C Chiu; Lee-Ming Chuang
Journal:  Diabetes       Date:  2007-06-19       Impact factor: 9.461

5.  MiaB protein is a bifunctional radical-S-adenosylmethionine enzyme involved in thiolation and methylation of tRNA.

Authors:  Fabien Pierrel; Thierry Douki; Marc Fontecave; Mohamed Atta
Journal:  J Biol Chem       Date:  2004-08-30       Impact factor: 5.157

6.  Zinc transporter-8 gene (SLC30A8) is associated with type 2 diabetes in Chinese.

Authors:  Jie Xiang; Xiao-Ying Li; Min Xu; Jie Hong; Yun Huang; Jiao-Rong Tan; Xi Lu; Meng Dai; Bing Yu; Guang Ning
Journal:  J Clin Endocrinol Metab       Date:  2008-07-15       Impact factor: 5.958

7.  A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.

Authors:  Laura J Scott; Karen L Mohlke; Lori L Bonnycastle; Cristen J Willer; Yun Li; William L Duren; Michael R Erdos; Heather M Stringham; Peter S Chines; Anne U Jackson; Ludmila Prokunina-Olsson; Chia-Jen Ding; Amy J Swift; Narisu Narisu; Tianle Hu; Randall Pruim; Rui Xiao; Xiao-Yi Li; Karen N Conneely; Nancy L Riebow; Andrew G Sprau; Maurine Tong; Peggy P White; Kurt N Hetrick; Michael W Barnhart; Craig W Bark; Janet L Goldstein; Lee Watkins; Fang Xiang; Jouko Saramies; Thomas A Buchanan; Richard M Watanabe; Timo T Valle; Leena Kinnunen; Gonçalo R Abecasis; Elizabeth W Pugh; Kimberly F Doheny; Richard N Bergman; Jaakko Tuomilehto; Francis S Collins; Michael Boehnke
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

Review 8.  The bigger picture of FTO: the first GWAS-identified obesity gene.

Authors:  Ruth J F Loos; Giles S H Yeo
Journal:  Nat Rev Endocrinol       Date:  2013-11-19       Impact factor: 43.330

9.  Weak or no association of TCF7L2 variants with Type 2 diabetes risk in an Arab population.

Authors:  Osama Alsmadi; Khalid Al-Rubeaan; Gamal Mohamed; Fadi Alkayal; Haya Al-Saud; Nouran Abu Al-Saud; Nasser Al-Daghri; Shahinaz Mohammad; Brian F Meyer
Journal:  BMC Med Genet       Date:  2008-07-26       Impact factor: 2.103

10.  Validation of type 2 diabetes risk variants identified by genome-wide association studies in Han Chinese population: a replication study and meta-analysis.

Authors:  Yi-Cheng Chang; Pi-Hua Liu; Yu-Hsiang Yu; Shan-Shan Kuo; Tien-Jyun Chang; Yi-Der Jiang; Jiun-Yi Nong; Juey-Jen Hwang; Lee-Ming Chuang
Journal:  PLoS One       Date:  2014-04-15       Impact factor: 3.240

View more
  10 in total

Review 1.  The role of IGF2BP2, an m6A reader gene, in human metabolic diseases and cancers.

Authors:  Jinyan Wang; Lijuan Chen; Ping Qiang
Journal:  Cancer Cell Int       Date:  2021-02-10       Impact factor: 5.722

2.  KCNQ1 rs2237895 polymorphism is associated with the therapeutic response to sulfonylureas in Iranian type 2 diabetes mellitus patients.

Authors:  Siavash Shakerian; Homeira Rashidi; Maryam Tahmasebi Birgani; Alihossein Saberi
Journal:  J Diabetes Metab Disord       Date:  2022-01-11

3.  Early Prediction for Prediabetes and Type 2 Diabetes Using the Genetic Risk Score and Oxidative Stress Score.

Authors:  Ximei Huang; Youngmin Han; Kyunghye Jang; Minjoo Kim
Journal:  Antioxidants (Basel)       Date:  2022-06-17

Review 4.  S-adenosylmethionine tRNA modification: unexpected/unsuspected implications of former/new players.

Authors:  Raffaella Adami; Daniele Bottai
Journal:  Int J Biol Sci       Date:  2020-09-30       Impact factor: 6.580

5.  Association Between Single Nucleotide Polymorphisms in CDKAL1 and HHEX and Type 2 Diabetes in Chinese Population.

Authors:  Chuanyin Li; Keyu Shen; Man Yang; Ying Yang; Wenyu Tao; Siqi He; Li Shi; Yufeng Yao; Yiping Li
Journal:  Diabetes Metab Syndr Obes       Date:  2021-01-05       Impact factor: 3.168

Review 6.  Association of KCNQ1rs2237892C⟶T Gene with Type 2 Diabetes Mellitus: A Meta-Analysis.

Authors:  Wen-Jia Han; Jian-Yi Deng; Hua Jin; Li-Ping Yin; Jin-Xia Yang; Jiang-Jie Sun
Journal:  J Diabetes Res       Date:  2021-11-22       Impact factor: 4.011

Review 7.  Association of CDKAL1 RS10946398 Gene Polymorphism with Susceptibility to Diabetes Mellitus Type 2: A Meta-Analysis.

Authors:  Ning Xu; Ting-Ting Zhang; Wen-Jia Han; Li-Ping Yin; Nan-Zheng Ma; Xiu-Yan Shi; Jiang-Jie Sun
Journal:  J Diabetes Res       Date:  2021-12-24       Impact factor: 4.011

Review 8.  Single-nucleotide polymorphisms as important risk factors of diabetes among Middle East population.

Authors:  Iman Akhlaghipour; Amir Reza Bina; Mohammad Reza Mogharrabi; Ali Fanoodi; Amir Reza Ebrahimian; Soroush Khojasteh Kaffash; Atefeh Babazadeh Baghan; Mohammad Erfan Khorashadizadeh; Negin Taghehchian; Meysam Moghbeli
Journal:  Hum Genomics       Date:  2022-04-02       Impact factor: 4.639

9.  Association of Genetic Variants in IGF2-Related Genes With Risk of Metabolic Syndrome in the Chinese Han Population.

Authors:  Weiwei Gui; Julong Liang; Xihua Lin; Nanjing Shi; Yiyi Zhu; Bowen Tan; Hong Li
Journal:  Front Endocrinol (Lausanne)       Date:  2021-05-20       Impact factor: 5.555

10.  Lack of association between fat mass and obesity-associated genetic variant (rs8050136) and type 2 diabetes mellitus.

Authors:  Amjad M Yousuf; Firoz A Kannu; Talha M Youssouf; Fatimah N Alsuhaimi; Abdulaziz M Aljohani; Fayez H Alsehli; Omar F Khabour; Yahya A Almutawif; Mustafa A Najim; Hatem A Mahmood
Journal:  Saudi Med J       Date:  2022-02       Impact factor: 1.422

  10 in total

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