Literature DB >> 32266429

On the minimum value of the Colless index and the bifurcating trees that achieve it.

Tomás M Coronado1,2, Mareike Fischer3, Lina Herbst3, Francesc Rosselló4,5, Kristina Wicke3.   

Abstract

Measures of tree balance play an important role in the analysis of phylogenetic trees. One of the oldest and most popular indices in this regard is the Colless index for rooted bifurcating trees, introduced by Colless (Syst Zool 31:100-104, 1982). While many of its statistical properties under different probabilistic models for phylogenetic trees have already been established, little is known about its minimum value and the trees that achieve it. In this manuscript, we fill this gap in the literature. To begin with, we derive both recursive and closed expressions for the minimum Colless index of a tree with n leaves. Surprisingly, these expressions show a connection between the minimum Colless index and the so-called Blancmange curve, a fractal curve. We then fully characterize the tree shapes that achieve this minimum value and we introduce both an algorithm to generate them and a recurrence to count them. After focusing on two extremal classes of trees with minimum Colless index (the maximally balanced trees and the greedy from the bottom trees), we conclude by showing that all trees with minimum Colless index also have minimum Sackin index, another popular balance index.

Keywords:  Blancmange curve; Colless index; Phylogenetic tree; Sackin index; Takagi curve; Tree balance

Mesh:

Year:  2020        PMID: 32266429     DOI: 10.1007/s00285-020-01488-9

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  3 in total

1.  A simple derivation of the mean of the Sackin index of tree balance under the uniform model on rooted binary labeled trees.

Authors:  Matthew C King; Noah A Rosenberg
Journal:  Math Biosci       Date:  2021-09-16       Impact factor: 2.144

2.  On Sackin's original proposal: the variance of the leaves' depths as a phylogenetic balance index.

Authors:  Tomás M Coronado; Arnau Mir; Francesc Rosselló; Lucía Rotger
Journal:  BMC Bioinformatics       Date:  2020-04-23       Impact factor: 3.169

3.  On the Colijn-Plazzotta numbering scheme for unlabeled binary rooted trees.

Authors:  Noah A Rosenberg
Journal:  Discrete Appl Math       Date:  2020-12-18       Impact factor: 1.139

  3 in total

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