| Literature DB >> 32266242 |
Pilar Lloris-Garcerá1, Stefan Klinter1, Liuhong Chen2, Michael J Skynner2, Robin Löving1, Jens Frauenfeld1.
Abstract
Integral membrane proteins (IMPs) are central to many physiological processes and represent ∼60% of current drug targets. An intricate interplay with the lipid molecules in the cell membrane is known to influence the stability, structure and function of IMPs. Detergents are commonly used to solubilize and extract IMPs from cell membranes. However, due to the loss of the lipid environment, IMPs usually tend to be unstable and lose function in the continuous presence of detergent. To overcome this problem, various technologies have been developed, including protein engineering by mutagenesis to improve IMP stability, as well as methods to reconstitute IMPs into detergent-free entities, such as nanodiscs based on apolipoprotein A or its membrane scaffold protein (MSP) derivatives, amphipols, and styrene-maleic acid copolymer-lipid particles (SMALPs). Although significant progress has been made in this field, working with inherently unstable human IMP targets (e.g., GPCRs, ion channels and transporters) remains a challenging task. Here, we present a novel methodology, termed DirectMX (for direct membrane extraction), taking advantage of the saposin-lipoprotein (Salipro) nanoparticle technology to reconstitute fragile IMPs directly from human crude cell membranes. We demonstrate the applicability of the DirectMX methodology by the reconstitution of a human solute carrier transporter and a wild-type GPCR belonging to the human chemokine receptor (CKR) family. We envision that DirectMX bears the potential to enable studies of IMPs that so far remained inaccessible to other solubilization, stabilization or reconstitution methods.Entities:
Keywords: DirectMX; GPCR; SLC transporter; Salipro nanoparticles; direct membrane extraction; drug discovery; membrane protein; saposin
Year: 2020 PMID: 32266242 PMCID: PMC7096351 DOI: 10.3389/fbioe.2020.00215
Source DB: PubMed Journal: Front Bioeng Biotechnol ISSN: 2296-4185
FIGURE 1Schematic illustration of the DirectMX methodology. The reconstitution of IMPs directly from crude cell membranes into Salipro nanoparticles is shown here for a recombinantly expressed example protein. (A) For DirectMX reconstitution of IMPs, homogenized crude cell membranes are incubated with digitonin and SapA. (B) The lipid-binding ability of SapA allows for self-assembly of native membrane lipid disks, thereby reconstituting IMPs into a scaffold of SapA molecules. (C) If the target IMP is fused to an affinity tag, the protein-containing nanoparticles can be readily purified by affinity chromatography using detergent-free buffers. The purified nanoparticles are then available for further downstream processes, such as SEC, or any kind of biochemical, structural or biophysical analysis.
FIGURE 2Purification and analysis of Salipro-SLC nanoparticles by chromatography. (A) Salipro nanoparticles containing SLC were separated by affinity chromatography from other Salipro-IMPs via the Strep-tag II affinity tag of SLC. Silver staining after SDS-PAGE of protein samples from the different purification steps showed that the eluate is pure as it contained only SLC and SapA. (B) Analytical SEC of the eluate from the affinity chromatography step with both UV (absorption at 280 nm) and fluorescence (excitation at 500 nm and emission at 512 nm) detection, able to monitor the daGFP reporter fused to SLC, revealed a homogenous population of Salipro-SLC nanoparticles. (C) The concentrated eluate from the affinity chromatography step was fractioned by preparative SEC. Fractions were visualized by silver staining after SDS-PAGE to verify the pure preparation of SLC in Salipro nanoparticles. (D) The pooled and concentrated SEC peak fractions [F17–19 in (C)] maintained their assembled state even after freeze-thawing as judged by analytical SEC. (E) Representative negative-stain electron micrograph showing a homogenous population of Salipro nanoparticles, which in this case each contain a single SLC. The scale bar represents 200 nm.
FIGURE 3Purification and analysis of Salipro-CKR nanoparticles. (A) Salipro nanoparticles containing CKR were separated by affinity chromatography from other Salipro-IMPs via the DDK affinity tag of CKR. Silver staining after SDS-PAGE of samples from the different purification steps showed that the eluate contained protein bands corresponding to glycosylated CKR and SapA. (B) Peak fractions from the preparative SEC corresponding to Salipro-CKR nanoparticles were pooled and concentrated. The nanoparticles maintained their assembled state even after freeze-thawing as judged by analytical SEC with UV detection (absorption at 280 nm). (C) The presence of CKR in purified Salipro-CKR nanoparticles was verified by Western blots probed with a Myc-specific antibody. (D) De-glycosylation using PNGase F of purified Salipro-CKR nanoparticles resulted in reduced apparent molecular weights and “sharpened” protein bands as revealed by silver staining after SDS-PAGE. RNase B served as positive control.