| Literature DB >> 32264962 |
Lei Yin1, Chuang Yue2, Hongwei Jing1, Hongyuan Yu1, Li Zuo3, Tao Liu4.
Abstract
BACKGROUND: Inflammation is one of the factors associated with prostate cancer. The cytokine tumor necrosis factor-alpha (TNF-α) plays an important role in inflammation. Several studies have focused on the association between TNF-α polymorphisms and prostate cancer development. Our meta-analysis aimed to estimate the association between TNF-α rs1800629 (- 308 G/A), rs361525 (- 238 G/A) and rs1799724 polymorphisms and prostate cancer risk.Entities:
Keywords: Meta-analysis; Polymorphism; Prostate cancer; Susceptibility; Tumor necrosis factor-alpha
Mesh:
Year: 2020 PMID: 32264962 PMCID: PMC7137332 DOI: 10.1186/s41065-020-00125-1
Source DB: PubMed Journal: Hereditas ISSN: 0018-0661 Impact factor: 3.271
Characteristics of the studies eligible for current meta-analysis
| Author | Year | Country | Ethnicity | Case | Control | SOC | Cases | Controls | HWE | Genotype | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MM | MW | WW | MM | MW | WW | |||||||||
| rs1800629 | ||||||||||||||
| Jones | 2013 | USA | African-American | 279 | 535 | HB | 5 | 103 | 171 | 14 | 153 | 368 | 0.687 | Illumina’s Golden gate |
| Zabaleta | 2008 | USA | African-American | 67 | 130 | HB | 2 | 9 | 56 | 3 | 33 | 94 | 0.958 | Sequence |
| Berhane | 2012 | India | Asian | 150 | 150 | HB | 6 | 24 | 120 | 1 | 18 | 131 | 0.662 | ARMS-PCR |
| Wu | 2003 | China-Taiwan | Asian | 96 | 126 | HB | 2 | 20 | 74 | 1 | 22 | 103 | 0.882 | PCR-RFLP |
| Alidoost | 2019 | Iran | Asian | 100 | 110 | HB | 0 | 16 | 84 | 0 | 14 | 96 | 0.476 | PCR-RFLP/ARMS-PCR |
| Kesarwani | 2009 | India | Asian | 197 | 256 | HB | 1 | 21 | 175 | 4 | 37 | 215 | 0.115 | PCR-RFLP |
| Ali | 2019 | Iraq | Asian | 30 | 30 | PB | 12 | 18 | 0 | 24 | 6 | 0 | 0.543 | PCR-RFLP |
| Ge | 2007 | China | Asian | 245 | 245 | HB | 2 | 39 | 204 | 2 | 48 | 195 | 0.609 | TaqMan |
| Dluzniewski | 2012 | USA | Caucasian | 468 | 468 | HB | 14 | 113 | 341 | 6 | 126 | 336 | 0.125 | MassArray |
| Pardo | 2019 | Venezuela | Caucasian | 40 | 40 | HB | 0 | 6 | 34 | 0 | 11 | 29 | 0.313 | PCR-RFLP |
| Zabaleta | 2008 | USA | Caucasian | 479 | 400 | HB | 9 | 148 | 322 | 10 | 118 | 272 | 0.505 | Sequence |
| Sáenz-López | 2008 | Spain | Caucasian | 296 | 310 | PB | 5 | 70 | 221 | 2 | 52 | 256 | 0.714 | TaqMan |
| Moore | 2009 | USA | Caucasian | 949 | 857 | PB | 21 | 228 | 700 | 11 | 205 | 641 | 0.231 | TaqMan |
| Danforth | 2008 | USA | Caucasian | 1155 | 1380 | PB | 26 | 336 | 793 | 45 | 418 | 926 | 0.795 | TaqMan/MGBEclipse assay |
| Danforth | 2008 | USA | Caucasian | 1111 | 1125 | PB | 25 | 294 | 792 | 33 | 286 | 806 | 0.217 | TaqMan/MGBEclipse assay |
| Ribeiro | 2012 | Portugal | Caucasian | 449 | 557 | PB | 8 | 115 | 326 | 7 | 143 | 407 | 0.155 | TaqMan |
| Wang | 2009 | USA | Caucasian | 251 | 250 | PB | 12 | 79 | 160 | 9 | 69 | 172 | 0.529 | TaqMan |
| Bandil | 2017 | India | Asian | 105 | 115 | HB | 9 | 15 | 81 | 4 | 7 | 104 | < 0.001 | ARMS-PCR |
| Omrani | 2008 | Iran | Asian | 41 | 105 | HB | 0 | 36 | 5 | 3 | 99 | 3 | < 0.001 | ASO-PCR |
| McCarron | 2002 | United Kingdom | Caucasian | 239 | 220 | HB | 6 | 66 | 167 | 13 | 57 | 150 | 0.023 | ARMS-PCR |
| OH | 2000 | USA | Caucasian | 73 | 73 | HB | 0 | 53 | 20 | 0 | 53 | 20 | < 0.001 | allele-specific PCR |
| Zhang | 2010 | USA | Caucasian | 116 | 128 | PB | 116 | 128 | CBMALD-TOF-MS | |||||
| rs361525 | ||||||||||||||
| Pardo | 2019 | Venezuela | Caucasian | 40 | 40 | HB | 0 | 4 | 36 | 0 | 1 | 39 | 0.936 | PCR-RFLP |
| OH | 2000 | USA | Caucasian | 73 | 73 | HB | 0 | 23 | 50 | 0 | 23 | 50 | 0.11 | allele-specific PCR |
| Zabaleta | 2008 | USA | Caucasian | 471 | 385 | HB | 6 | 41 | 424 | 0 | 39 | 346 | 0.295 | Sequence |
| Alidoost | 2019 | Iran | Asian | 100 | 110 | HB | 0 | 10 | 90 | 0 | 5 | 105 | 0.807 | PCR-RFLP/ARMS-PCR |
| Danforth | 2008 | USA | Caucasian | 1114 | 1126 | PB | 1 | 121 | 992 | 3 | 100 | 1023 | 0.737 | TaqMan/MGBEclipse assay |
| Ge | 2007 | China | Asian | 245 | 245 | HB | 0 | 10 | 235 | 0 | 22 | 223 | 0.461 | TaqMan |
| Zabaleta | 2008 | USA | African-American | 64 | 126 | HB | 0 | 6 | 58 | 2 | 10 | 114 | 0.006 | Sequence |
| Bandil | 2017 | India | Asian | 105 | 115 | HB | 12 | 60 | 33 | 20 | 86 | 9 | < 0.001 | ARMS-PCR |
| rs1799724 | ||||||||||||||
| Danforth | 2008 | USA | Caucasian | 1139 | 1378 | PB | 13 | 203 | 923 | 14 | 254 | 1110 | 0.9 | TaqMan/MGBEclipse assay |
| Danforth | 2008 | USA | Caucasian | 1108 | 1101 | PB | 17 | 183 | 908 | 19 | 220 | 862 | 0.257 | TaqMan/MGBEclipse assay |
| Kesarwani | 2009 | India | Asian | 197 | 256 | HB | 4 | 57 | 136 | 4 | 56 | 196 | 1 | PCR-RFLP |
| Zabaleta | 2008 | USA | African-American | 464 | 372 | HB | 6 | 59 | 399 | 8 | 41 | 323 | < 0.001 | Sequence |
| Zabaleta | 2008 | USA | Caucasian | 6 | 14 | HB | 3 | 0 | 3 | 7 | 0 | 7 | < 0.001 | Sequence |
| rs1799964 | ||||||||||||||
| Danforth | 2008 | USA | Caucasian | 1142 | 1375 | PB | 60 | 361 | 721 | 58 | 441 | 876 | 0.791 | TaqMan/MGBEclipse assay |
| Danforth | 2008 | USA | Caucasian | 1143 | 1155 | PB | 54 | 370 | 719 | 64 | 377 | 714 | 0.129 | TaqMan/MGBEclipse assay |
| Kesarwani | 2009 | India | Asian | 197 | 256 | HB | 90 | 64 | 43 | 83 | 91 | 82 | < 0.001 | PCR-RFLP |
HB hospital-based, PB population-based, SOC source of control, PCR-FLIP polymerase chain reaction and restrictive fragment length polymorphism; ARMS amplification refractory mutation system, HWE Hardy–Weinberg equilibrium of control group, W wild type-allele, M mutant-allele
Fig. 1A flowchart illustrating the search strategy about TNF-α rs1800629, rs361525, rs1799724 and rs1799964 polymorphisms and PCA risk was shown
Fig. 2MAF for the TNF-α rs1800629, rs361525 and rs1799724 polymorphsms from 1000 Genomes Browser. Vertical line, MAF; Horizontal line, ethnicity type. EAS: East Asian; EUR: European; AFR: African; AMR: American; SAS: South Asian
Fig. 3Meta-analysis. a. Forest plots of TNF-α rs1800629 polymorphism and PCA risk (A-allele vs. G-allele). b. Forest plot of TNF-α rs1799724 polymorphism and PCA risk (T-allele vs. C-allele). c. Forest plot of TNF-α rs361525 polymorphism and PCA risk (AA vs. GG). d. Forest plot of TNF-α rs361525 polymorphism and PCA risk (A-allele vs. G-allele) on subgroup of genotyping method (Others). e. Forest plot of TNF-α rs361525 polymorphism and PCA risk (A-allele vs. G-allele) on subgroup of genotyping method (PCR-RFLP)
Publication bias tests (Begg’s funnel plot and Egger’s test for publication bias test) for rs1800629 and rs361525 polymorphisms
| Egger’s test | Begg’s test | ||||||
|---|---|---|---|---|---|---|---|
| Genetic type | Coefficient | Standard error | 95%CI of intercept | ||||
| rs1800629 | |||||||
| A-allele vs. G-allele | 0.009 | 0.681 | 0.01 | 0.989 | (−1.418–1.437) | 0.21 | 0.833 |
| AG vs. GG | 0.331 | 0.528 | 0.63 | 0.539 | (−0.779–1.440) | 0.1 | 0.922 |
| AA+AG vs. GG | 0.046 | 0.619 | 0.07 | 0.941 | (−1.249–1.341) | 0.33 | 0.74 |
| rs361525 | |||||||
| A-allele vs. G-allele | −0.216 | 1.259 | 0.17 | 0.87 | (−2.866–3.297) | 0.12 | 0.902 |
| AG vs. GG | −0.293 | 0.935 | −0.3 | 0.765 | (−2.582–1.996) | − 0.12 | 1 |
| AA+AG vs. GG | −0.303 | 0.938 | −0.3 | 0.757 | (−2.599–1.991) | − 0.12 | 1 |
The pooled ORs and 95%CIs for the association between TNF polymorphisms and prostate cancer susceptibility in total and stratified analysis
| Variables | N | Case/Control | M-allele vs. W-allele | MW vs. WW | MM + MW vs. WW |
|---|---|---|---|---|---|
| rs1800629 | |||||
| Total | 22 | 6936/7619 | 1.03 (0.92–1.16)0.001 0.580 | 1.04 (0.93–1.17)0.040 0.486 | 1.06 (0.94–1.18)0.013 0.353 |
| HWE | 18 | 7485/6792 | 1.03 (0,92–1.16)0.006 0.584 | 1.04 (0,93–1.16)0.091 0.509 | 1.05 (0,94–1.17)0.051 0.429 |
| Ethnicity | |||||
| Asian | 8 | 964/1137 | 1.03 (0.68–1.56)0.000 0.881 | 1.04 (0.70–1.56)0.038 0.845 | 1.09 (0.70–1.71)0.006 0.698 |
| Caucasian | 12 | 5626/5817 | 1.01 (0.94–1.08)0.223 0.838 | 1.02 (0.94–1.11)0.525 0.672 | 1.02 (0.94–1.11)0.433 0.625 |
| African-American | 2 | 346/665 | 0.93 (0.47–1.86)0.049 0.843 | 0.87 (0.28–2.67)0.009 0.804 | 0.90 (0.34–2.37)0.016 0.829 |
| SOC | |||||
| HB | 14 | 2579/2973 | 1.02 (0.86–1.22)0.012 0.787 | 1.00 (0.81–1.22)0.023 0.972 | 1.01 (0.82–1.24)0.012 0.787 |
| PB | 8 | 4357/4646 | 1.04 (0.89–1.22)0.009 0.600 | 1.04 (0.94–1.14)0.298 0.483 | 1.04 (0.95–1.14)0.199 0.425 |
| Genotyping | |||||
| Others | 5 | 977/1309 | 1.07 (0.91–1.26)0.420 0.420 | 0.97 (0.62–1.53)0.021 0.900 | 1.07 (0.79–1.45)0.079 0.668 |
| Sequencing | 2 | 546/530 | 0.94 (0.75–1.19)0.166 0.608 | 0.76 (0.34–1.70)0.055 0.505 | 0.80 (0.41–1.55)0.086 0.506 |
| TaqMan | 7 | 4456/4733 | 1.04 (0.92–1.17)0.081 0.520 | 1.02 (0.93–1.12)0.278 0.638 | 1.02 (0.93–1.12)0.152 0.672 |
| PCR-RFLP | 5 | 463/562 | 0.74 (0.43–1.28)0.030 0.280 | 0.90 (0.63–1.29)0.263 0.565 | 0.89 (0.63–1.26)0.186 0.520 |
| ARMS-PCR | 3 | 494/485 | 1.56 (0.74–3.29)0.001 0.239 | 1.28 (0.93–1.78)0.163 0.135 | 1.54 (0.80–2.97)0.024 0.192 |
| rs361525 | |||||
| Total | 8 | 2212/2222 | 0.93 (0.66–1.32)0.007 0.684 | 0.86 (0.52–1.41)0.000 0.542 | 0.85 (0.52–1.39)0.000 0.525 |
| HWE | 6 | 2043/1979 | 1.11 (0,91–1.35)0.111 0.321 | 1.02 (0,69–1.52)0.055 0.905 | 1.05 (0,73–1.52)0.803 0.794 |
| Ethnicity | |||||
| Asian | 3 | 450/470 | 0.72 (0.34–1.50)0.039 0.380 | 0.55 (0.15–1.99)0.002 0.360 | 0.54 (0.15–2.00)0.001 0.357 |
| Caucasian | 4 | 1698/1624 | 1.16 (0.94–1.44)0.673 0.164 | 1.16 (0.94–1.44)0.673 0.164 | 1.16 (0.94–1.44)0.673 0.164 |
| African-American | 1 | 64/126 | – | – | – |
| Genotyping | |||||
| Others | 2 | 178/188 | 0.65 (0.47–0.89)0.111 0.008 | 0.44 (0.09–2.25)0.002 0.326 | 0.44 (0.08–2.28)0.002 0.325 |
| Sequencing | 2 | 535/511 | 1.07 (0.72–1.57)0.595 0.746 | 0.90 (0.59–1.38)0.590 0.633 | 0.98 (0.65–1.48)0.999 0.936 |
| PCR-RFLP | 2 | 140/150 | 2.59 (0.98–6.85)0.628 0.055 | 2.68 (1.00–7.20)0.626 0.050 | 2.68 (1.00–7.20)0.626 0.050 |
| TaqMan | 2 | 1359/1371 | 0.77 (0.30–2.01)0.017 0.599 | 0.78 (0.28–2.20)0.011 0.640 | 0.77 (0.28–2.13)0.013 0.620 |
| rs1799724 | |||||
| Total | 5 | 2914/3121 | 0.95 (0.84–1.07)0.169 0.381 | 1.01 (0.80–1.27)0.054 0.951 | 0.95 (0.83–1.07)0.120 0.390 |
| HWE | 3 | 2444/2735 | 0.99 (0,78–1.26)0.042 0.930 | 0.98 (0,74–1.30)0.037 0.896 | 0.99 (0,75–1.30)0.032 0.931 |
| Caucasian | 3 | 2253/2493 | 0.90 (0.79–1.03)0.403 0.115 | 0.88 (0.76–1.02)0.196 0.082 | 0.88 (0.76–1.02)0.400 0.089 |
Ph: value of Q-test for heterogeneity test; P: Z-test for the statistical significance of the OR; HB hospital-based, PB population-based, SOC source of control, PCR-FLIP polymerase chain reaction and restrictive fragment length polymorphism, ARMS amplification refractory mutation system HWE, Hardy–Weinberg equilibrium of control group, W wild type-allele, M mutant-allele
Fig. 4Publication bias. a. Begg’s funnel plot for publication bias test (A-allele vs. G-allele). b. Egger’s publication bias plot (A-allele vs. G-allele). c. Begg’s funnel plot for publication bias test (A-allele vs. G-allele). d. Egger’s publication bias plot (A-allele vs. G-allele)
Fig. 5Sensitivity analysis. a. Sensitivity analysis for TNF-α rs1800629 polymorphism and RA risk (A-allele vs. G-allele). b. Sensitivity analysis between TNF-α rs361525 polymorphism and RA risk (A-allele vs. G-allele)