| Literature DB >> 32264846 |
Qi Chen1, Jia Rui2, Qingqing Hu3, Ying Peng4, Hao Zhang5, Zeyu Zhao2, Yeqing Tong1, Yang Wu1, Yanhua Su2, Benhua Zhao2, Xuhua Guan6, Tianmu Chen7.
Abstract
BACKGROUND: Shigellosis is one of the main diarrhea diseases in developing countries. However, the transmissibility of shigellosis remains unclear.Entities:
Keywords: Effective reproduction number; Mathematical model; Shigellosis; Transmissibility
Mesh:
Year: 2020 PMID: 32264846 PMCID: PMC7136996 DOI: 10.1186/s12879-020-04976-x
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Fig. 1Epidemiological characteristics of Shigellosis cases from 2005 to 2017 in Hubei Province, China. a, reported cases and incidence of Shigellosis cases; b, sex distribution; c, age distribution
Epidemiological characteristics of 130,770 reported Shigellosis cases in Hubei Province, China
| Variables | Number of cases | Percentage (%) |
|---|---|---|
| Sex | 130,770 | 100.00 |
| Male | 73,981 | 56.57 |
| Female | 56,789 | 43.43 |
| Age (Years) | 130,770 | 100.00 |
| 0~1 | 31,521 | 24.10 |
| 2~10 | 19,876 | 15.20 |
| 11~20 | 10,546 | 8.06 |
| 21~30 | 13,027 | 9.96 |
| 31~40 | 10,308 | 7.88 |
| 41~50 | 12,460 | 9.53 |
| 51~60 | 14,058 | 10.75 |
| 61~70 | 10,237 | 7.83 |
| > 70 | 8737 | 6.68 |
| 130,770 | 100.00 | |
| 0~ | 31,947 | 24.43 |
| 1~ | 40,367 | 30.87 |
| 2~ | 20,849 | 15.94 |
| 3~ | 12,072 | 9.23 |
| 4~ | 7147 | 5.47 |
| 5~ | 4392 | 3.36 |
| 6~ | 2981 | 2.28 |
| 7~ | 11,015 | 8.42 |
D, duration from illness onset date to diagnosed date
Fig. 2Distribution of duration from illness onset date to diagnosed date of 130,770 Shigellosis cases in Hubei Province, China. IQR, interquartile range
Regional distribution of reported Shigellosis cases in Hubei Province, China, 2005–2017
| City | Reported cases | Reported death cases | ||
|---|---|---|---|---|
| Number | Cumulative incidence (per 100,000) | Number | Case fatality rate (%) | |
| Wuhan | 51,948 | 482.51 | 3 | 0.01 |
| Yichang | 11,284 | 273.22 | 0 | 0.00 |
| Jingzhou | 10,739 | 188.47 | 0 | 0.00 |
| Huanggang | 7426 | 117.48 | 0 | 0.00 |
| Enshi | 7393 | 221.86 | 2 | 0.03 |
| Xianning | 6222 | 246.32 | 2 | 0.03 |
| Xiaogan | 5495 | 112.05 | 1 | 0.02 |
| Xiangyang | 4875 | 86.45 | 1 | 0.02 |
| Xiantao | 4494 | 388.48 | 0 | 0.00 |
| Huangshi | 4253 | 172.50 | 2 | 0.05 |
| Shiyan | 3851 | 112.96 | 0 | 0.00 |
| Jingmen | 3516 | 121.19 | 1 | 0.03 |
| Tianmen | 2980 | 220.07 | 1 | 0.03 |
| Suizhou | 2477 | 112.50 | 0 | 0.00 |
| Qianjiang | 2069 | 230.04 | 0 | 0.00 |
| Ezhou | 1172 | 109.69 | 0 | 0.00 |
| Shennongjia | 65 | 84.50 | 0 | 0.00 |
Fig. 3Reported incidences in 12 urban areas and 14 rural areas from 2005 to 2017 in Hubei Province, China
Fig. 4Curve fitting of Model 1 to reported data from 2005 to 2017 in Hubei Province, China
Estimated values of b and b from 2005 to 2017 in Hubei Province, China
| Year | 95% CI of | 95% CI of | ||||
|---|---|---|---|---|---|---|
| Mean | Lower bound | Upper bound | Mean | Lower bound | Upper bound | |
| 2005 | 0.0816 | 0.0623 | 0.1009 | 8.5900 × 10−9 | −4.0432 × 10−9 | 2.1223 × 10−8 |
| 2006 | 0.1054 | 0.0857 | 0.1250 | 5.5557 × 10− 9 | 2.8943 × 10− 9 | 8.2171 × 10− 9 |
| 2007 | 0.0881 | 0.0708 | 0.1055 | 1.9438 × 10−11 | 1.5076 × 10−11 | 2.3799 × 10− 111 |
| 2008 | 0.0937 | 0.0753 | 0.1121 | 3.5762 × 10−12 | 1.7830 × 10−12 | 5.3694 × 10−12 |
| 2009 | 0.0917 | 0.0724 | 0.1109 | 3.4175 × 10−13 | 2.9759 × 10−13 | 3.8591 × 10−13 |
| 2010 | 0.0792 | 0.0569 | 0.1014 | 3.3700 × 10− 13 | 1.5747 × 10− 13 | 5.1653 × 10− 13 |
| 2011 | 0.0840 | 0.0561 | 0.1120 | 2.6340 × 10− 13 | 8.0393 × 10−14 | 4.4641 × 10− 13 |
| 2012 | 0.0845 | 0.0697 | 0.0993 | 1.4250 × 10− 13 | 1.1837 × 10− 13 | 1.6663 × 10− 13 |
| 2013 | 0.0908 | 0.0619 | 0.1197 | 9.2350 × 10− 14 | 5.0479 × 10− 14 | 1.3422 × 10− 13 |
| 2014 | 0.0905 | 0.0739 | 0.1072 | 1.2351 × 10− 14 | 5.5676 × 10−15 | 1.9135 × 10− 14 |
| 2015 | 0.0787 | 0.0590 | 0.0983 | 4.6233 × 10−15 | 9.4468 × 10−16 | 8.3020 × 10− 15 |
| 2016 | 0.0889 | 0.0556 | 0.1221 | 3.1740 × 10− 15 | 2.5692 × 10− 15 | 3.7788 × 10− 15 |
| 2017 | 0.0816 | 0.0697 | 0.0935 | 2.7180 × 10− 15 | 1.4383 × 10− 15 | 3.9977 × 10− 15 |
| Pooled | 0.0898 | 0.0851 | 0.0946 | 1.1264 × 10− 9 | 4.1123 × 10−10 | 1.8416 × 10− 9 |
CI Confidence interval
Fig. 5Four scenarios to simulate the contribution of b and b during the transmission (b = 0 and b = 0; b = 0; b = 0; and control denoted as “None”)
Fig. 6Distribution of R estimated by Model 2 in Hubei Province, China
The yearly R estimated by Model 2 from 2005 to 2017 in Hubei Province, China
| Year | Mean | Lower bound of 95% CI | Upper bound of 95% CI |
|---|---|---|---|
| 2005 | 1.08 | 0.83 | 1.34 |
| 2006 | 1.39 | 1.14 | 1.65 |
| 2007 | 1.17 | 0.94 | 1.40 |
| 2008 | 1.24 | 1.00 | 1.48 |
| 2009 | 1.21 | 0.96 | 1.47 |
| 2010 | 1.05 | 0.75 | 1.34 |
| 2011 | 1.11 | 0.74 | 1.48 |
| 2012 | 1.12 | 0.92 | 1.31 |
| 2013 | 1.20 | 0.82 | 1.58 |
| 2014 | 1.20 | 0.98 | 1.42 |
| 2015 | 1.04 | 0.78 | 1.30 |
| 2016 | 1.18 | 0.74 | 1.62 |
| 2017 | 1.08 | 0.92 | 1.24 |
CI Confidence interval
The fitting results of the 11 equations to the values of R estimated by Model 2 from 2005 to 2017 in Hubei Province, China
| Equation | Model summary | Parameter estimates | ||||
|---|---|---|---|---|---|---|
| Constant | b1 | b2 | b3 | |||
| Linear | 0.138 | 0.211 | 1.224 | −0.009 | – | – |
| Logarithmic | 0.092 | 0.315 | 1.226 | −0.038 | – | – |
| Inverse | 0.014 | 0.703 | 1.149 | 0.044 | – | – |
| Quadratic | 0.138 | 0.475 | 1.227 | − 0.010 | 0.000 | – |
| Cubic | 0.151 | 0.671 | 1.183 | 0.021 | −0.005 | 0.000 |
| Compound | 0.131 | 0.224 | 1.218 | 0.993 | – | – |
| Power | 0.083 | 0.339 | 1.219 | −0.030 | – | – |
| S | 0.011 | 0.738 | 0.137 | 0.032 | – | – |
| Growth | 0.131 | 0.224 | 0.197 | −0.007 | – | – |
| Exponential | 0.131 | 0.224 | 1.218 | −0.007 | – | – |
| Logistic | 0.131 | 0.224 | 0.821 | 1.008 | – | – |
Fig. 7Simulated trend of R in Hubei Province, China. a, Linear model; b, Quadratic model; c, Cubic model