Literature DB >> 3226145

Unsupervised waveform classification for multi-neuron recordings: a real-time, software-based system. I. Algorithms and implementation.

M Salganicoff1, M Sarna, L Sax, G L Gerstein.   

Abstract

We describe a new, mostly software-based device for the sorting of waveforms in an extracellular multi-neuron recording situation. The sorting algorithm is largely unattended, and, after an initial 'learning' process, works in real time. Shape comparisons are based on up to 8 time points in the waveform; these points (the reduced feature set) are chosen automatically by analyzing the current incoming data stream. A feasibility version has been implemented on a LSI-11/2 system, using FORTRAN for set-up calculations and assembler for the real-time operations. Detailed comparisons with performance of other sorting devices are presented in the companion paper.

Mesh:

Year:  1988        PMID: 3226145     DOI: 10.1016/0165-0270(88)90132-x

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  13 in total

1.  PKCgamma contributes to a subset of the NMDA-dependent spinal circuits that underlie injury-induced persistent pain.

Authors:  W J Martin; A B Malmberg; A I Basbaum
Journal:  J Neurosci       Date:  2001-07-15       Impact factor: 6.167

2.  Spike sorting by a minimax reduced feature set based on finite differences.

Authors:  Chien-Chang Yen; Wei-Chang Shann; Chen-Tung Yen; Meng-Li Tsai
Journal:  J Physiol Sci       Date:  2008-12-25       Impact factor: 2.781

3.  Traditional waveform based spike sorting yields biased rate code estimates.

Authors:  Valérie Ventura
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-16       Impact factor: 11.205

4.  Detection of spontaneous synaptic events with an optimally scaled template.

Authors:  J D Clements; J M Bekkers
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

5.  Analysis of single-unit firing patterns in multi-unit intrafascicular recordings.

Authors:  E V Goodall; K W Horch; T G McNaughton; C M Lybbert
Journal:  Med Biol Eng Comput       Date:  1993-05       Impact factor: 2.602

6.  Techniques to identify and temporally correlate calcium transients between multiple regions of interest in vertebrate neural circuits.

Authors:  Julian Sorensen; Lukasz Wiklendt; Tim Hibberd; Marcello Costa; Nick J Spencer
Journal:  J Neurophysiol       Date:  2016-11-30       Impact factor: 2.714

7.  Extracellular electrical signals in a neuron-surface junction: model of heterogeneous membrane conductivity.

Authors:  Pavel M Bulai; Pavel G Molchanov; Andrey A Denisov; Taras N Pitlik; Sergey N Cherenkevich
Journal:  Eur Biophys J       Date:  2012-02-12       Impact factor: 1.733

Review 8.  Towards the automatic classification of neurons.

Authors:  Rubén Armañanzas; Giorgio A Ascoli
Journal:  Trends Neurosci       Date:  2015-03-09       Impact factor: 13.837

9.  A correlogram analysis of the activity in the rostral ventromedial medulla of awake rats and in rats anesthetized with ketamine or pentobarbital following the administration of morphine.

Authors:  S McGaraughty; S Reinis; J Tsoukatos
Journal:  Exp Brain Res       Date:  1995       Impact factor: 1.972

10.  Automatic spike sorting using tuning information.

Authors:  Valérie Ventura
Journal:  Neural Comput       Date:  2009-09       Impact factor: 2.026

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