| Literature DB >> 32260588 |
Katarzyna Stępnik1, Wirginia Kukula-Koch2.
Abstract
As the number of central nervous system (CNS) drug candidates is constantly growing, there is a strong need for precise a priori prediction of whether an administered compound is able to cross the blood-brain barrier (BBB). The aim of this study was to evaluate the ability to cross the BBB of triterpenoid saponins occurring in Astragalus mongholicus roots. The research was carried out using in silico methods combined with postmortem studies on the brain tissues of mice treated with isolated astragaloside IV (AIV). Firstly, to estimate the ability to cross the BBB by the tested saponins, new quantitative structure-activity relationship (QSAR) models were established. The reliability and predictability of the model based on the values of the blood-brain barrier penetration descriptor (logBB), the difference between the n-octanol/water and cyclohexane/water logP (ΔlogP), the logarithm of n-octanol/water partition coefficient (logPow), and the excess molar refraction (E) were both confirmed using the applicability domain (AD). The critical leverage value h* was found to be 0.128. The relationships between the standardized residuals and the leverages were investigated here. The application of an in vitro acetylcholinesterase-inhibition test showed that AIV can be recognized as the strongest inhibitor among the tested compounds. Therefore, it was isolated for the postmortem studies on brain tissues and blood using semi-preparative HPLC with the mobile phase composed of water, methanol, and ethyl acetate (1.7:2.1:16.2 v/v/v). The results of the postmortem studies on the brain tissues show a regular dependence of the final concentration of AIV in the analyzed brain samples of animals treated with 12.5 and 25 mg/kg b.w. of AIV (0.00012299 and 0.0002306 mg, respectively, per one brain). Moreover, the AIV logBB value was experimentally determined and found to be equal to 0.49 ± 0.03.Entities:
Keywords: Astragalus; Fabaceae; QSAR; astragaloside; brain tissue; computational studies; milkvetch; triterpenoid saponins
Mesh:
Substances:
Year: 2020 PMID: 32260588 PMCID: PMC7177733 DOI: 10.3390/ijms21072534
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Previously established quantitative structure–activity relationship (QSAR) models for estimation of ability of compounds to cross the blood–brain barrier (BBB).
| References | Descriptor Variables | Number of Compounds | Number of Descriptor Variables | R2 | Standard Error |
|---|---|---|---|---|---|
| Platts et al. [ | Linear free energy relationship (LFER) parameters (see | 148 | 5 | 0.71 | 0.367 |
| Young et al. [ | Molecular weight (MW) | 6 | 1 | 0.797 | 0.760 |
| Young et al. [ | The difference between the | 6 | 1 | 0.98 | 0.249 |
| Rose et al. [ | The hydrogen electrotopological index for hydrogen bond donors, the second order difference valence molecular connectivity index, and the hydrogen E-state index for aromatic CHs groups | 102 | 3 | 0.66 | 0.45 |
| van de Waterbeemd and Kansy [ | Polarity | 56 | 1 | 0.939 | 0.431 |
| van de Waterbeemd and Kansy [ | Polar surface area (PSA) | 56 | 1 | 0.972 | 0.294 |
| Lombardo et al. [ | Solvation free energy in water | 55 | 1 | 0.82 | 0.41 |
| Kaliszan and Markuszewski [ | MW and logarithm of n-octanol/water partition coefficient (logPow) | 20 | 2 | 0.801 | 0.486 |
| Kaliszan and Markuszewski [ | MW and logarithm of cyclohexane/water partition coefficient (logPcw) | 20 | 2 | 0.919 | 0.321 |
| Salminen et al. [ | MW, indicator variable of ionization, and logPo/w | 26 | 3 | 0.839 | 0.47 |
| Clark [ | PSA and ClogP | 55 | 2 | 0.887 | 0.354 |
| Feher et al. [ | The number of hydrogen-bond acceptors, logP, and PSA | 61 | 3 | 0.730 | 0.424 |
| Keseru and Molnar [ | Free energy of solvation | 55 | 1 | 0.85 | 0.37 |
| Kaznessis et al. [ | Solvent accessible surface area, solute dipole, number of hydrogen-bond acceptors and donors, and molecular volume | 76 | 5 | 0.97 | 0.173 |
| Narayanan and Gunturi [ | Variable selection and modeling method based on the prediction (VSMP) used for the selection of descriptor combinations based on two parameters | 88 | 324 | ||
| This paper | LFER parameters | 40 | 5 | 0.768 | 0.432 |
| This paper | Excess molar refraction (E), ΔlogP, and logPo/w | 40 | 3 | 0.740 | 0.436 |
The chemical structures of the tested compounds.
| Name | Structure |
|---|---|
| Astragaloside I (AI) |
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| Astragaloside II (AII) |
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| Astragaloside III (AIII) |
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| Astragaloside IV (AIV) |
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| Astragaloside V (AV) |
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| Astragaloside VI (AVI) |
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| Astragaloside VII (AVII) |
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The BBB descriptors calculated in silico (ACD/Percepta). logBB, Blood–brain barrier penetration descriptor; logPS, Logarithmic permeability–surface area product; log(PSFubrain), Brain/plasma equilibration rate; Fu, Fraction unbound in plasma; Fb, fraction unbound in the brain.
| No. | CAS No. | logBB | logPS | log(PSFubrain) | Fu | Fb |
|---|---|---|---|---|---|---|
| 1 | 84680-75-1 | 0.46 | −4.0 | −4.6 | 0.67 | 0.24 |
| 2 | 84676-89-1 | 0.11 | −4.7 | −4.9 | 0.80 | 0.62 |
| 3 | 84687-42-3 | 0.15 | −4.7 | −5.0 | 0.78 | 0.56 |
| 4 | 84687-43-4 | 0.24 | −4.6 | −4.9 | 0.79 | 0.45 |
| 5 | 84687-44-5 | <−2 | <−5 | −6.9 | 0.87 | 0.96 |
| 6 | 84687-45-6 | <−2 | <−5 | −6.8 | 0.88 | 0.94 |
| 7 | 84687-46-7 | <−2 | <−5 | −6.7 | 0.88 | 0.94 |
The LFER and chosen physicochemical parameters, calculated for the entire set of the tested compounds (ACD/Percepta). A, B, S, E, V, LFER parameters; MW, Molecular weight; TPSA, Topological polar surface area; logPow, Logarithm of the n-octanol/water partition coefficient; logPcw, Logarithm of the cyclohexane/water partition coefficient; logPhw, Logarithm of heptane/water partition coefficient; ΔlogP, difference between the n-octanol/water and cyclohexane/water logP values.
| No. | CAS No. | A | B | S | E | V | MW | TPSA | logPow | Polarizability | logPcw | logPhw | ΔlogP |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 84680-75-1 | 1.72 | 4.87 | 4.62 | 3.72 | 6.4335 | 869.04 | 240.36 | 5.02 | 86.01 | −7.125 | −7.543 | 12.145 |
| 2 | 84676-89-1 | 1.99 | 4.73 | 4.57 | 3.86 | 5.8542 | 798.95 | 234.29 | 3.47 | 78.53 | −8.445 | −8.9 | 11.915 |
| 3 | 84687-42-3 | 2.33 | 4.69 | 4.4 | 3.97 | 5.8385 | 784.97 | 228.22 | 3.767 | 78.41 | −9.269 | −9.533 | 13.036 |
| 4 | 84687-43-4 | 2.26 | 4.71 | 4.38 | 3.98 | 5.8385 | 784.97 | 228.22 | 3.757 | 78.41 | −9.015 | −9.3 | 12.772 |
| 5 | 84687-44-5 | 3.09 | 6.12 | 5.52 | 4.92 | 6.8688 | 947.11 | 307.37 | 2.093 | 91.78 | −15.628 | −15.861 | 17.721 |
| 6 | 84687-45-6 | 3.01 | 6.22 | 5.46 | 4.96 | 6.8688 | 947.11 | 307.37 | 1.899 | 91.78 | −15.592 | −15.823 | 17.491 |
| 7 | 84687-46-7 | 3.03 | 6.15 | 5.5 | 4.93 | 6.8688 | 947.11 | 307.37 | 2.083 | 91.78 | −15.412 | −15.661 | 17.495 |
| 8 | 30516-87-1 | 0.47 | 1.7 | 1.77 | 1.62 | 1.8192 | 267.24 | 109.19 | 0.171 | 0 | −3.401 | −3.625 | 3.572 |
| 9 | 73590-58-6 | 0.35 | 2.05 | 3.18 | 2.67 | 2.5161 | 345.42 | 96.31 | 1.444 | 37.27 | −1.995 | −2.926 | 3.439 |
| 10 | 101-40-6 | 0.13 | 0.53 | 0.43 | 0.37 | 1.5088 | 155.28 | 12.03 | 3.733 | 19.75 | 3.485 | 3.554 | 0.248 |
| 11 | 23830-88-8 | 0.42 | 1.04 | 1.14 | 1.5 | 1.5317 | 230.09 | 36.42 | 1.987 | 22.71 | −0.264 | −0.376 | 2.251 |
| 12 | 103-90-2 | 0.91 | 0.93 | 1.66 | 1.12 | 1.1724 | 151.16 | 49.33 | 0.149 | 16.81 | −4.518 | −4.582 | 4.667 |
| 13 | 60-80-0 | 0 | 1.28 | 1.75 | 1.42 | 1.4846 | 188.23 | 23.55 | 0.24 | 21.63 | −1.228 | −1.691 | 1.468 |
| 14 | 54910-89-3 | 0.13 | 0.78 | 1.19 | 1.01 | 2.24 | 309.33 | 21.26 | 5.147 | 31.67 | 4.728 | 4.46 | 0.419 |
| 15 | 54739-18-3 | 0.23 | 1.14 | 0.95 | 0.66 | 2.3113 | 318.33 | 56.84 | 4.267 | 30.46 | 3.083 | 3.056 | 1.184 |
| 16 | 79559-97-0 | 0.13 | 0.67 | 1.44 | 1.83 | 2.2647 | 306.23 | 12.03 | 5.888 | 34.02 | 5.705 | 5.222 | 0.183 |
| 17 | 53179-11-6 | 0.31 | 1.88 | 2.9 | 2.76 | 3.7697 | 477.04 | 43.78 | 6.431 | 54.52 | 4.235 | 3.349 | 2.196 |
| 18 | 7481-89-2 | 0.44 | 1.9 | 1.78 | 1.63 | 1.506 | 211.22 | 88.15 | −1.653 | 20.19 | −5.618 | −5.815 | 3.965 |
| 19 | 161814-49-9 | 0.64 | 2.61 | 3.52 | 2.71 | 3.8194 | 505.63 | 139.57 | 3.321 | 53.37 | −1.597 | −2.428 | 4.918 |
| 20 | 69655-05-6 | 0.31 | 1.77 | 1.85 | 2.03 | 1.5951 | 236.23 | 88.74 | −0.716 | 22.67 | −3.887 | −4.24 | 3.171 |
| 21 | 129618-40-2 | 0.42 | 1.37 | 2.29 | 2.36 | 1.9446 | 266.3 | 58.12 | 1.83 | 29.23 | −1.059 | −1.667 | 2.889 |
| 22 | 159989-64-7 | 1.27 | 2.81 | 3.62 | 3.2 | 4.5367 | 567.78 | 127.2 | 5.66 | 64.37 | −1.292 | −1.941 | 6.952 |
| 23 | 151-83-7 | 0.24 | 1.42 | 1.55 | 1.27 | 2.0903 | 262.3 | 66.48 | 2.201 | 27.68 | 0.175 | −0.087 | 2.026 |
| 24 | 76-73-3 | 0.52 | 1.3 | 1.41 | 1.11 | 1.8945 | 238.28 | 75.27 | 1.971 | 24.68 | −1.018 | −1.108 | 2.989 |
| 25 | 76-75-5 | 0.51 | 1.34 | 2 | 1.49 | 1.9014 | 242.34 | 90.29 | 1.45 | 25.99 | −1.838 | −2.195 | 3.288 |
| 26 | 59468-90-5 | 0.31 | 1.21 | 1.96 | 2.64 | 2.3215 | 341.77 | 49.89 | 4.219 | 35.95 | 2.491 | 1.893 | 1.728 |
| 27 | 1088-11-5 | 0.47 | 0.88 | 1.94 | 2.05 | 1.933 | 270.71 | 41.46 | 3.435 | 29.97 | 1.115 | 0.616 | 2.320 |
| 28 | 439-14-5 | 0 | 0.94 | 1.95 | 2.07 | 2.0739 | 284.74 | 32.67 | 3.784 | 32.08 | 3.27 | 2.571 | 0.514 |
| 29 | 13655-52-2 | 0.29 | 1.36 | 1.12 | 1.18 | 2.1587 | 249.35 | 41.49 | 3.143 | 29.75 | 1.346 | 1.263 | 1.797 |
| 30 | 29122-68-7 | 0.78 | 1.85 | 1.97 | 1.48 | 2.1763 | 266.34 | 84.58 | 0.839 | 29.44 | −3.963 | −4.105 | 4.802 |
| 31 | 63659-18-7 | 0.29 | 1.53 | 1.31 | 1.31 | 2.5745 | 307.43 | 50.72 | 3.979 | 35.25 | 2.145 | 1.995 | 1.834 |
| 32 | 120014-06-4 | 0 | 1.5 | 2.49 | 2.12 | 3.0307 | 379.49 | 38.77 | 5.024 | 43.77 | 4.121 | 3.282 | 0.903 |
| 33 | 357-70-0 | 0.31 | 1.45 | 1.92 | 1.89 | 2.1734 | 287.35 | 41.93 | 2.375 | 31.84 | 0.011 | −0.431 | 2.364 |
| 34 | 123441-03-2 | 0 | 1.23 | 1.47 | 1.05 | 2.1176 | 250.34 | 32.78 | 2.915 | 28.99 | 2.096 | 1.75 | 0.819 |
| 35 | 142852-50-4 | 0.13 | 1.3 | 2.12 | 2.19 | 3.154 | 376.53 | 32.34 | 6.551 | 45.53 | 5.762 | 5.073 | 0.789 |
| 36 | 91374-21-9 | 0.41 | 1.27 | 1.41 | 1.38 | 2.2321 | 260.37 | 32.34 | 3.51 | 31.07 | 1.298 | 1.113 | 2.212 |
| 37 | 52-26-6 | 0.5 | 1.47 | 1.59 | 2.23 | 2.0648 | 285.34 | 52.93 | 2.471 | 30.93 | −0.426 | −0.694 | 2.897 |
| 38 | 83903-06-4 | 0.4 | 2.57 | 2.2 | 2.55 | 3.1776 | 413.54 | 108.06 | 2.512 | 46.52 | −1.054 | −1.461 | 3.566 |
| 39 | 59-33-6 | 0 | 1.45 | 1.73 | 1.66 | 2.3868 | 285.38 | 28.6 | 3.353 | 34.67 | 2.433 | 1.947 | 0.920 |
| 40 | 83-67-0 | 0.24 | 1.22 | 1.89 | 1.46 | 1.2223 | 180.16 | 67.23 | −0.635 | 17.86 | −3.184 | −3.61 | 2.549 |
| 41 | 36318-56-6 | 0.42 | 1.13 | 0.90 | 1.26 | 1.4278 | 175.23 | 36.42 | 1.398 | 20.82 | −0.969 | −0.941 | 2.367 |
| 42 | 4201-26-7 | 0.42 | 1.11 | 1.01 | 1.41 | 1.5502 | 209.68 | 36.42 | 1.902 | 22.64 | −0.377 | −0.416 | 2.279 |
| 43 | 38941-33-2 | 0.42 | 1.01 | 1.46 | 2.17 | 1.8119 | 397.89 | 36.42 | 3.199 | 28.05 | 1.154 | 0.828 | 2.045 |
| 44 | 76-57-3 | 0.23 | 1.58 | 1.92 | 2.16 | 2.2057 | 299.36 | 41.93 | 2.232 | 32.85 | 0.078 | −0.405 | 2.154 |
| 45 | 66357-35-5 | 0.13 | 1.60 | 1.40 | 1.43 | 2.3985 | 314.4 | 114.9 | 3.067 | 33.41 | 1.586 | 1.337 | 1.481 |
| 46 | 82626-48-0 | 0.00 | 1.33 | 2.39 | 2.35 | 2.4740 | 307.39 | 38.13 | 3.793 | 37.08 | 2.857 | 2.013 | 0.936 |
| 47 | 133099-04-4 | 0.49 | 1.58 | 2.82 | 2.80 | 3.3978 | 426.55 | 55.56 | 6.129 | 50.08 | 3.455 | 2.627 | 2.674 |
Figure 1Experimental logBB values (logBBexp) [50] vs. in silico logBB values, predicted on the basis of Equation (2) (logBBpred).
Figure 2Williams plot of the new QSAR model (Equation (2)).
Figure 3Scatterplot of the fitted and cross-validated responses versus the actual responses.
Figure 4The chromatogram of the acetylcholinesterase inhibition activity in a thin layer chromatography (TLC)-bioautography based assay obtained for three astragalosides, namely, astragalosides IV (left spot), III (middle spot), and I (right spot).
Figure 5The MS/MS spectrum of astragaloside IV, recorded in the positive ionization mode and at a collision energy of 25V.
Figure 6The total ion current (TIC) chromatogram of astragaloside IV, recorded in the positive ionization mode.
Figure 7The comparison between the logBB values obtained experimentally, computed using ACD/Percepta software, and those calculated by the newly established model (Equation (2)).
Analysis of variance obtained for Equations (1) and (2). SE Coefficient, standard errors; Adjusted SS, adjusted sum of squares; Adjusted MSE, adjusted mean square errors.
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| 23.6018 | 4.7204 | 20.22 | ||||
| A | 0.289 | −0.38 | 0.706 | 10.97 | 0.0337 | 0.0337 | 0.14 |
| B | 0.255 | −4.61 | 0.000 | 27.95 | 4.9542 | 4.9542 | 21.22 |
| S | 0.283 | −0.62 | 0.538 | 24.38 | 0.0905 | 0.0905 | 0.39 |
| E | 0.256 | −0.95 | 0.351 | 15.20 | 0.2086 | 0.2086 | 0.89 |
| V | 0.158 | 7.58 | 0.000 | 12.43 | 13.4293 | 13.4293 | 57.52 |
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| 7.9384 | 0.2335 | |||||
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| 31.5402 | ||||||
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| 24.6816 | 8.2272 | 43.18 | ||||
| E | 0.105 | −2.08 | 0.045 | 3.13 | 0.8221 | 0.8221 | 4.31 |
| ΔlogP | 0.0371 | −2.64 | 0.012 | 3.20 | 1.3298 | 1.3298 | 6.98 |
| logPow | 0.0412 | 6.74 | 0.000 | 1.32 | 8.6603 | 8.6603 | 45.46 |
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| 6.8586 | 0.1905 | |||||
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| 31.5402 | ||||||
Statistical parameters obtained for the newly established models. N, number of compounds; R2, coefficients of determination; RMSE, root-mean-square error of calibration; RMSECV, root-mean-square error of leave-ten-out cross-validation; PRESS, predicted residual sum of squares.
| QSAR Model | Statistical Parameters | Training Set | Test Set | External Validation |
|---|---|---|---|---|
| 1 | N | 30 | 10 | 7 |
| R2 | 82.43% | 80.80% | 81.01% | |
| RMSE | 0.1797 | 0.1869 | 0.4426 | |
| RMSECV | 0.4843 | - | - | |
| PRESS | 6.5141 | 9.7206 | 9.3462 | |
| 2 | N | 30 | 10 | 7 |
| R2 | 78.25% | 74.12% | 79.28% | |
| RMSE | 0.1858 | 0.2731 | 0.2340 | |
| RMSECV | 0.6819 | - | - | |
| PRESS | 8.7754 | 9.7206 | 7.5450 |