| Literature DB >> 32260566 |
Shaiq Sultan1, Andrea Rozzi2, Jessica Gasparello1, Alex Manicardi2,3, Roberto Corradini2, Chiara Papi1, Alessia Finotti1, Ilaria Lampronti1, Eva Reali4, Giulio Cabrini1,5, Roberto Gambari1,6, Monica Borgatti1.
Abstract
Peptide nucleic acids (PNAs) have been demonstrated to be very useful tools for gene regulation at different levels and with different mechanisms of action. In the last few years the use of PNAs for targeting microRNAs (anti-miRNA PNAs) has provided impressive advancements. In particular, targeting of microRNAs involved in the repression of the expression of the cystic fibrosis transmembrane conductance regulator (CFTR) gene, which is defective in cystic fibrosis (CF), is a key step in the development of new types of treatment protocols. In addition to the anti-miRNA therapeutic strategy, inhibition of miRNA functions can be reached by masking the miRNA binding sites present within the 3'UTR region of the target mRNAs. The objective of this study was to design a PNA masking the binding site of the microRNA miR-145-5p present within the 3'UTR of the CFTR mRNA and to determine its activity in inhibiting miR-145-5p function, with particular focus on the expression of both CFTR mRNA and CFTR protein in Calu-3 cells. The results obtained support the concept that the PNA masking the miR-145-5p binding site of the CFTR mRNA is able to interfere with miR-145-5p biological functions, leading to both an increase of CFTR mRNA and CFTR protein content.Entities:
Keywords: CFTR.; PNA-masking; Peptide nucleic acids; cystic fibrosis; delivery; miR-145-5p; miRNA targeting; microRNAs
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Year: 2020 PMID: 32260566 PMCID: PMC7181265 DOI: 10.3390/molecules25071677
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Comparison of the peptide nucleic acid (PNA)-based miRNA-targeting (upper part of the panel) and the PNA-masking (lower part of the panel) strategies to inhibit miR-145-5p biological functions. Dark grey box: the miR-145-5p binding site; light grey boxes: miR-145-5p; white box: miR145-maskingPNA; black boxes: the anti-miR-145-5p PNA-a145. Dotted arrows: inhibition/interference.
Figure 2(A). Location of the miR-145-5p binding sites within the cystic fibrosis transmembrane conductance regulator (CFTR) 3′UTR mRNA region. (B). Interactions between the miR145-maskingPNA and CFTR mRNA (comparison with the interaction of CFTR mRNA with miR-145-5p is also shown). (C). Interactions between the miR145-maskingPNA and the Myosin-6 mRNA [41], containing in the 3′UTR sequence three miR-145-5p binding sites (the miR-145-5p binding site#1 is here shown, which exhibits the highest levels of complementarity to the miR145-maskingPNA). The miR145-maskingPNA is fully complementary with the 3′UTR region of the CFTR mRNA.
Figure 3Effects of the miR145-maskingPNA on the RT-PCR amplification of 3′UTR mRNA sequences. (A). Effects of the miR145-maskingPNA (black symbols) and of the negative control PNA (white symbols) on the amplification of CFTR mRNA sequences. Inhibition by miR145-maskingPNA is clearly seen at 50 nM. The negative control PNA was not effective. Effects of the miR145-maskingPNA on the amplification of Myosin-6 (B), PTBP1 (polypyrimidine tract binding protein 1) and NEDD9 (neural precursor cell expressed, developmentally down-regulated 9) (C), IRS1 (insulin receptor substrate 1), and KLF4 (Kruppel-like factor 4) (D) mRNAs. No PCR inhibition in any of these examples was appreciable even at the highest concentrations used.
Figure 4Effects of the miR145-maskingPNA on CFTR mRNA (A) and CFTR protein (B,C) in Calu-3 cells. Calu-3 cells were treated with the indicated concentrations of the miR145-maskingPNA for 3 days. Then, RNA was extracted and CFTR mRNA content determined by RT-qPCR (A). At the same time, CFTR was quantified by Western blotting (C, black bars). In parallel, Calu-3 cells were treated with a negative control PNA for 3 days and Western blotting was performed (C, white bars). In panel B, representative Western blotting results are shown. In panel C, averages ± SD are shown (n = 3) with respect to untreated Calu-3 cells. * = p < 0.05; ** = p < 0.01 (miR145-maskingPNA vs. negative control PNA).