| Literature DB >> 32260540 |
Jéssica Pereira1, Mônica Santos1, Roger Delabio1, Mônica Barbosa2, Marília Smith3, Spencer Payão1, Lucas Rasmussen1.
Abstract
Helicobacter pylori (H. pylori) is one of the main causes of gastric gancer. TNF-related apoptosis-inducing ligand (TRAIL) is a protein able to promote apoptosis in cancer cells, however not in gastric cancer, which presents resistance to apoptosis via TRAIL. It is believed that MicroRNA-106b-5p might be involved in this resistance, although its role in Gastric Cancer is unclear. We aimed to determine the expression of microRNA-106b-5p and TRAIL in patients with gastric diseases, infected by H. pylori, and understand the relationship between these genes and their role in apoptosis and the gastric cancer pathways. H. pylori was detected by PCR, gene expression analysis was performed by real-time-qPCR, and bioinformatics analysis was performed using the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Cytoscape software. A total of 244 patients were divided into groups (Control, Gastritis, and Cancer); H. pylori was detected in 42.2% of the samples. The cancer group had a poor expression of TRAIL (p < 0.0001) and overexpression of microRNA-106b-5p (p = 0.0005), however, our results confirmed that these genes are not directly related to each other although both are apoptosis-related regulators. Our results also indicated that H. pylori decreases microRNA-106b-5p expression and that this is a carcinogenic bacterium responsible for gastric diseases.Entities:
Keywords: Helicobacter pylori; TRAIL; apoptosis; gastric cancer; microRNA-106b-5p
Mesh:
Substances:
Year: 2020 PMID: 32260540 PMCID: PMC7230378 DOI: 10.3390/genes11040393
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Patient and group information.
| Groups | Control | Gastritis | Cancer | Patients Ethnic Origins (%) |
|---|---|---|---|---|
| Male (%) | 22 (36.7) | 53 (40.16) | 30 (57.7) | European (95%) |
| Female (%) | 38 (63.3) | 79 (59.84) | 22 (42.3) | Japanese (2.5%) |
| Total (%) | 60 (100) | 132 (100) | 52 (100) | African (2.5%) |
| Mean Age ± SD | 55 ± 15.6 | 54 ± 16 | 53 ± 10 |
Figure 1Two percent agarose gel stained with ethidium bromide showing H. pylori PCR products (150 bp) used to identify H. pylori in gastric biopsy samples from patients with normal gastric mucosa (1 to 3), gastritis (4 to 7), and gastric cancer (8 to 11). Water was used as negative control; as positive control, H. pylori DNA from culture was used. The band of approximately 1200 bp is a non-specific band, not associated with H. pylori.
H. pylori detected in the Control, Gastritis, and Cancer groups.
| Control (%) | Gastritis (%) | Cancer (%) | Total (%) | |
|---|---|---|---|---|
|
| 11 (18.3) | 54 (40.9) | 38 (73.1) | 103 (42.2) |
|
| 49 (81.7) | 78 (59.1) | 14 (26.9) | 141 (57.8) |
|
| 3.08 (1.45–6.64) | 12.09 (4.73–28.7) | ||
|
| 0.0028 * | <0.0001 * | ||
|
| 60 (100) | 132 (100) | 52 (100) | 244 (100) |
* statistically significant.
Figure 2Analysis of TNF-related apoptosis-inducing ligand (TRAIL) gene expression in Control, Gastritis, and Cancer groups, considering patients that were positive and negative for H. pylori infection in all groups. * statistically significant.
Figure 3Analysis of TRAIL gene expression for the presence of H. pylori in Control, Gastritis, and Cancer groups. Legend: Neg.: Negative; Pos.: Positive. *statistically significant.
RQ mean for the groups considered in miR-106b-5p mRNA expression and p-value results for comparison between the groups.
|
|
|
|
|---|---|---|
| Control (0.9950) | Control vs. Gastritis | 0.0305 *A |
| Gastritis (0.9200) | Control vs. Cancer | 0.0307 *B |
| Cancer (1.080) | Gastritis vs. Cancer | 0.0004 *C |
| Control Neg. (0.9900) | Control Neg. vs. Control Pos. | 0.4559 |
| Control Pos. (0.9900) | Gastritis Neg. vs. Gastritis Pos. | <0.0001 *D |
| Gastritis Neg. (1.020) | Cancer Neg. vs. Cancer Pos. | 0.0192 *E |
| Gastritis Pos. (0.7800) | Control Neg. vs. Gastritis Neg. | 0.4068 |
| Cancer Neg. (1.350) | Control Neg. vs. Gastritis Pos. | <0.0001 *F |
| Cancer Pos. (1.000) | Control Neg. vs. Cancer Neg. | 0.0001 *G |
| Control Neg. vs. Cancer Pos. | 0.5370 |
* statistically significant. The p-values (*A–*G) refer to p-values of Figure 4.
Figure 4Analysis of miR-106b-5p gene expression not considering the presence of H. pylori in Control, Gastritis, and Cancer groups as well as analysis of miR-106b-5p gene expression with the presence of H. pylori. Legend: Neg.: Negative; Pos.: Positive. * statistically significant and p-values showed in Table 3.
Figure 5Cytoscape analysis considering TRAIL and miR-106b-5p in the apoptosis pathway. (A) Validated miRNAs that interact with the TRAIL (TNFSF10) gene. (B) Predicted miRNAs that have TRAIL (TNFSF10) as target gene. (C) Validated genes controlled by miR-106b-5p. (D) Predicted genes controlled by miR-106b-5p.
Figure 6The Volcano plots (GSE33651 and GSE103236) showed the differentially expressed genes (DEGs) between gastric cancer samples and normal samples.
Figure 7Venn diagrams representing the overlaps between GSE33651 and GSE103236 datasets. (A) Venn diagrams illustrating the overlap of downregulated genes. (B) Venn diagrams illustrating the overlap of upregulated genes.
Screening DEGs in gastric cancer.
| DEGs | Genes |
|---|---|
| Upregulated | MT1E, C1orf132, SST, GPX3, MAL, ATP4B, RNASE1, SCUBE2, C16orf89, CHGA |
| Downregulated | IVNS1ABP, THY1, SMARCA4, HAVCR2, INHBA, GTPBP4, TMEM158, MFSD12, COL18A1, PLA2G7, SSR2, COL1A1, CTHRC1, SERPINH1, IFI30, OLFML2B, SOD2, SPARC, FAM20C, MFSD13A, MYO1B, C1orf112, AGPAT4, KIF26B, S100A10, SULF1, UCK2, CENPF, LOX, PMEPA1, NCR3LG1, CTSA, ANGPT2, CENPN, SPON2, NUF2, APOC1, PGM2L1, FAP, COL12A1, KIF18B, ARHGAP39, CKS1B, IGF2BP3, FRP4, MMP3, LRP8, CLDN4, SLC4A11, LINC01296, EPHB2 |