Literature DB >> 32257741

Genome sequence of the potential probiotic eukaryote Saccharomyces cerevisiae KCCM 51299.

Junsang Hwang1,2, Ina Bang3, Donghyuk Kim3, Seung Chul Shin4, Young-Wook Chin5, Tae-Wan Kim5, Hyo Jin Kim1,2,3.   

Abstract

Saccharomyces cerevisiae KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively safe Nuruk. The genome sequence of S. cerevisiae KCCM 51299 was analyzed and a near-complete genome (12 Mb) with 19 contigs was assembled after PacBio single-molecule real-time (SMRT) sequencing. The genome of S. cerevisiae KCCM 51299 was compared to the S. cerevisiae s288c reference genome. Additionally, genes involved in glutathione biosynthesis were identified, and the glutathione biosynthesis pathway was constructed in silico based on these genes. Furthermore, S. cerevisiae KCCM 51299 genes were compared with those in other yeast genomes. Finally, genome-scale in silico flux analysis was carried out, and a metabolic engineering strategy for glutathione biosynthesis was generated. These results provide useful information to further develop eukaryotic probiotics to overproduce glutathione. © King Abdulaziz City for Science and Technology 2020.

Entities:  

Keywords:  Eukaryotic probiotics; Glutathione; Near-complete genome sequence; Saccharomyces cerevisiae KCCM 51299

Year:  2020        PMID: 32257741      PMCID: PMC7105541          DOI: 10.1007/s13205-020-02174-9

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  37 in total

1.  Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters.

Authors:  Mi-Ja Jung; Young-Do Nam; Seong Woon Roh; Jin-Woo Bae
Journal:  Food Microbiol       Date:  2011-10-05       Impact factor: 5.516

2.  Expert consensus document. The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic.

Authors:  Colin Hill; Francisco Guarner; Gregor Reid; Glenn R Gibson; Daniel J Merenstein; Bruno Pot; Lorenzo Morelli; Roberto Berni Canani; Harry J Flint; Seppo Salminen; Philip C Calder; Mary Ellen Sanders
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2014-06-10       Impact factor: 46.802

3.  What is flux balance analysis?

Authors:  Jeffrey D Orth; Ines Thiele; Bernhard Ø Palsson
Journal:  Nat Biotechnol       Date:  2010-03       Impact factor: 54.908

Review 4.  Introduction and expression of genes for metabolic engineering applications in Saccharomyces cerevisiae.

Authors:  Nancy A Da Silva; Sneha Srikrishnan
Journal:  FEMS Yeast Res       Date:  2012-01-12       Impact factor: 2.796

5.  G+C content variation along and among Saccharomyces cerevisiae chromosomes.

Authors:  K R Bradnam; C Seoighe; P M Sharp; K H Wolfe
Journal:  Mol Biol Evol       Date:  1999-05       Impact factor: 16.240

6.  Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.

Authors:  J S Edwards; B O Palsson
Journal:  BMC Bioinformatics       Date:  2000-07-27       Impact factor: 3.169

7.  Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.

Authors:  Zachary A King; Andreas Dräger; Ali Ebrahim; Nikolaus Sonnenschein; Nathan E Lewis; Bernhard O Palsson
Journal:  PLoS Comput Biol       Date:  2015-08-27       Impact factor: 4.475

8.  Probiotic Lactobacillus rhamnosus GR-1 and Lactobacillus reuteri RC-14 exhibit strong antifungal effects against vulvovaginal candidiasis-causing Candida glabrata isolates.

Authors:  S Y Chew; Y K Cheah; H F Seow; D Sandai; L T L Than
Journal:  J Appl Microbiol       Date:  2015-03-16       Impact factor: 3.772

9.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.

Authors:  Sergey Koren; Brian P Walenz; Konstantin Berlin; Jason R Miller; Nicholas H Bergman; Adam M Phillippy
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

10.  Effects of Lactobacillus rhamnosus and Lactobacillus acidophilus on bacterial vaginal pathogens.

Authors:  Lucia Bertuccini; Rosario Russo; Francesca Iosi; Fabiana Superti
Journal:  Int J Immunopathol Pharmacol       Date:  2017-03-01       Impact factor: 3.219

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.