Literature DB >> 20212490

What is flux balance analysis?

Jeffrey D Orth1, Ines Thiele, Bernhard Ø Palsson.   

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Year:  2010        PMID： 20212490      PMCID： PMC3108565          DOI： 10.1038/nbt.1614

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  25 in total

Review 1.  Metabolic modeling of microbial strains in silico.

Authors:  M W Covert; C H Schilling; I Famili; J S Edwards; I I Goryanin; E Selkov; B O Palsson
Journal:  Trends Biochem Sci       Date:  2001-03       Impact factor: 13.807

2.  Characterizing the metabolic phenotype: a phenotype phase plane analysis.

Authors:  Jeremy S Edwards; Ramprasad Ramakrishna; Bernhard O Palsson
Journal:  Biotechnol Bioeng       Date:  2002-01-05       Impact factor: 4.530

Review 3.  Metabolic modelling of microbes: the flux-balance approach.

Authors:  Jeremy S Edwards; Markus Covert; Bernhard Palsson
Journal:  Environ Microbiol       Date:  2002-03       Impact factor: 5.491

4.  The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Authors:  M Hucka; A Finney; H M Sauro; H Bolouri; J C Doyle; H Kitano; A P Arkin; B J Bornstein; D Bray; A Cornish-Bowden; A A Cuellar; S Dronov; E D Gilles; M Ginkel; V Gor; I I Goryanin; W J Hedley; T C Hodgman; J-H Hofmeyr; P J Hunter; N S Juty; J L Kasberger; A Kremling; U Kummer; N Le Novère; L M Loew; D Lucio; P Mendes; E Minch; E D Mjolsness; Y Nakayama; M R Nelson; P F Nielsen; T Sakurada; J C Schaff; B E Shapiro; T S Shimizu; H D Spence; J Stelling; K Takahashi; M Tomita; J Wagner; J Wang
Journal:  Bioinformatics       Date:  2003-03-01       Impact factor: 6.937

5.  Robustness analysis of the Escherichia coli metabolic network.

Authors:  J S Edwards; B O Palsson
Journal:  Biotechnol Prog       Date:  2000 Nov-Dec

6.  Metabolic capabilities of Escherichia coli: I. synthesis of biosynthetic precursors and cofactors.

Authors:  A Varma; B O Palsson
Journal:  J Theor Biol       Date:  1993-12-21       Impact factor: 2.691

7.  In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data.

Authors:  J S Edwards; R U Ibarra; B O Palsson
Journal:  Nat Biotechnol       Date:  2001-02       Impact factor: 54.908

8.  Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli.

Authors:  Adam M Feist; Daniel C Zielinski; Jeffrey D Orth; Jan Schellenberger; Markus J Herrgard; Bernhard Ø Palsson
Journal:  Metab Eng       Date:  2009-10-17       Impact factor: 9.783

9.  WEbcoli: an interactive and asynchronous web application for in silico design and analysis of genome-scale E.coli model.

Authors:  Tae-Sung Jung; Hock Chuan Yeo; Satty G Reddy; Wan-Sup Cho; Dong-Yup Lee
Journal:  Bioinformatics       Date:  2009-08-17       Impact factor: 6.937

Review 10.  Applications of genome-scale metabolic reconstructions.

Authors:  Matthew A Oberhardt; Bernhard Ø Palsson; Jason A Papin
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429
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  1092 in total

Review 1.  Using the reconstructed genome-scale human metabolic network to study physiology and pathology.

Authors:  A Bordbar; B O Palsson
Journal:  J Intern Med       Date:  2012-02       Impact factor: 8.989

2.  Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis.

Authors:  Juan Nogales; Steinn Gudmundsson; Eric M Knight; Bernhard O Palsson; Ines Thiele
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

Review 3.  Computational tools for the synthetic design of biochemical pathways.

Authors:  Marnix H Medema; Renske van Raaphorst; Eriko Takano; Rainer Breitling
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

4.  BioNetSim: a Petri net-based modeling tool for simulations of biochemical processes.

Authors:  Junhui Gao; Li Li; Xiaolin Wu; Dong-Qing Wei
Journal:  Protein Cell       Date:  2012-03-10       Impact factor: 14.870

Review 5.  A road map for the development of community systems (CoSy) biology.

Authors:  Karsten Zengler; Bernhard O Palsson
Journal:  Nat Rev Microbiol       Date:  2012-03-27       Impact factor: 60.633

Review 6.  Computational tools for metabolic engineering.

Authors:  Wilbert B Copeland; Bryan A Bartley; Deepak Chandran; Michal Galdzicki; Kyung H Kim; Sean C Sleight; Costas D Maranas; Herbert M Sauro
Journal:  Metab Eng       Date:  2012-05       Impact factor: 9.783

7.  The challenges of integrating multi-omic data sets.

Authors:  Bernhard Palsson; Karsten Zengler
Journal:  Nat Chem Biol       Date:  2010-11       Impact factor: 15.040

Review 8.  Systematizing the generation of missing metabolic knowledge.

Authors:  Jeffrey D Orth; Bernhard Ø Palsson
Journal:  Biotechnol Bioeng       Date:  2010-10-15       Impact factor: 4.530

9.  Comprehensive Mapping of Pluripotent Stem Cell Metabolism Using Dynamic Genome-Scale Network Modeling.

Authors:  Sriram Chandrasekaran; Jin Zhang; Zhen Sun; Li Zhang; Christian A Ross; Yu-Chung Huang; John M Asara; Hu Li; George Q Daley; James J Collins
Journal:  Cell Rep       Date:  2017-12-05       Impact factor: 9.423

10.  Revealing the mystery of metabolic adaptations using a genome scale model of Leishmania infantum.

Authors:  Abhishek Subramanian; Ram Rup Sarkar
Journal:  Sci Rep       Date:  2017-08-31       Impact factor: 4.379
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