| Literature DB >> 32244365 |
Minah Park1, Alex R Cook1, Jue Tao Lim1, Yinxiaohe Sun1, Borame L Dickens1.
Abstract
As the novel coronavirus (SARS-CoV-2) continues to spread rapidly across the globe, we aimed to identify and summarize the existing evidence on epidemiological characteristics of SARS-CoV-2 and the effectiveness of control measures to inform policymakers and leaders in formulating management guidelines, and to provide directions for future research. We conducted a systematic review of the published literature and preprints on the coronavirus disease (COVID-19) outbreak following predefined eligibility criteria. Of 317 research articles generated from our initial search on PubMed and preprint archives on 21 February 2020, 41 met our inclusion criteria and were included in the review. Current evidence suggests that it takes about 3-7 days for the epidemic to double in size. Of 21 estimates for the basic reproduction number ranging from 1.9 to 6.5, 13 were between 2.0 and 3.0. The incubation period was estimated to be 4-6 days, whereas the serial interval was estimated to be 4-8 days. Though the true case fatality risk is yet unknown, current model-based estimates ranged from 0.3% to 1.4% for outside China. There is an urgent need for rigorous research focusing on the mitigation efforts to minimize the impact on society.Entities:
Keywords: COVID-19; SARS-CoV-2; basic reproduction number; epidemiology; incubation period; serial interval; severity
Year: 2020 PMID: 32244365 PMCID: PMC7231098 DOI: 10.3390/jcm9040967
Source DB: PubMed Journal: J Clin Med ISSN: 2077-0383 Impact factor: 4.241
Figure 1PRISMA flow diagram.
Estimated size of the outbreak and epidemic doubling time from selected studies.
| Author | Data | Estimates | Estimation Period | Doubling Time |
|---|---|---|---|---|
| Published (2020) | ||||
| Du et al. [ | Number of confirmed cases outside China and travel data | 12,400 in Wuhan | By 22 Jan 2020 | 7.31 days |
| Wu et al. [ | Number of confirmed cases outside China and travel data | 75,815 in Wuhan | By 25 Jan 2020 | 6.4 days |
| Nishiura et al. [ | Proportion of asymptomatic cases among Japanese evacuated from Wuhan | 20,767 in Wuhan | By 29 Jan 2020 | - |
| Li et al. [ | Case reports from Wuhan | - | By 22 Jan 2020 | 7.4 days |
| Preprint | ||||
| Cao et al. [ | Number of confirmed cases in China and travel data | 18,556 in Wuhan | By 23 Jan 2020 | - |
| Chinazzi et al. [ | Number of confirmed cases outside China and travel data | 58,956 in Wuhan | By 23 Jan 2020 | 4.6 days |
| Xiong et al. [ | Number of confirmed cases in China | 49,093 in China | By 16 Feb 2020 | - |
| Q. Zhao et al. [ | Number of confirmed cases outside China and travel data | − | By 23 Jan 2020 | 2.9 days |
Estimated basic reproduction number () from selected studies.
| Author | Method | Estimates | Uncertainty | Estimation Period | |||
|---|---|---|---|---|---|---|---|
| Published (2020) | |||||||
| S. Zhao et al. [ | Exponential growth model | 2.56 | 2.49 | – | 2.63 | 1–15 Jan 2020 | 95%CI |
| S. Zhao et al. [ | Exponential growth model | 2.24 | 1.96 | – | 2.55 | 10–24 Jan 2020 | 95%CI |
| S. Zhao et al. [ | Exponential growth model | 3.58 | 2.89 | – | 4.39 | 10–24 Jan 2020 | 95%CI |
| Riou et al. [ | Stochastic simulations of outbreak trajectories | 2.2 | 1.4 | – | 3.8 | By 18 Jan 2020 | 90%HDI * |
| Li et al. [ | Analysis of epidemiological data | 2.2 | 1.4 | – | 3.9 | By 22 Jan 2020 | 95%CI |
| Tang et al. [ | SEIR model § | 6.47 | 5.71 | – | 7.23 | By 22 Jan 2020 | 95%CI |
| Du et al. [ | Hierarchical model | 1.90 | 1.47 | – | 2.59 | By 22 Jan 2020 | 95%CI |
| Jung et al. [ | Epidemic growth model | 2.1 | 2 | – | 2.2 | By 24 Jan 2020 | 95%CI |
| Jung et al. [ | Epidemic growth model | 3.2 | 2.7 | – | 3.7 | By 24 Jan 2020 | 95%CI |
| Wu et al. [ | SEIR model | 2.68 | 2.47 | – | 2.86 | By 25 Jan 2020 | 95%CI |
| Preprint | |||||||
| Shen et al. [ | SEIJR model §§ | 4.71 | 4.5 | – | 4.92 | On 12 Dec 2019 | 95%CI |
| Shen et al. [ | SEIJR model | 2.08 | 1.99 | – | 2.18 | On 22 Jan 2020 | 95%CI |
| Read et al. [ | SEIR model | 3.8 | 3.6 | – | 4.0 | By 22 Jan 2020 | 95%CI |
| Liu et al. [ | Exponential growth model | 2.90 | 2.32 | – | 3.63 | By 23 Jan 2020 | 95%CI |
| Liu et al. [ | MLE ¶ | 2.92 | 2.28 | – | 3.67 | By 23 Jan 2020 | 95%CI |
| Chinazziet al. [ | GLEAM ** and SLIR ## | 2.4 | 2.2 | – | 2.6 | By 23 Jan 2020 | 90%CI |
| Q. Zhao et al. [ | Exponential growth model | 5.7 | 3.4 | – | 9.2 | By 23 Jan 2020 | 95%CI |
| Cao et al. [ | Geo-stratified debiasing estimation framework | 3.24 | By 23 Jan 2020 | ||||
| Majumder et al. [ | Incidence Decay and Exponential Adjustment | 2.5 | 2.0 | – | 3.1 | By 26 Jan 2020 | Range |
| Xiong et al. [ | EIR model (I = Identified) | 2.7 | By 16 Feb 2020 | ||||
| Comparison with SARS-CoV and MERS-CoV | |||||||
| SARS-CoV [ | Hong Kong (2003) | 2.7 | 2.2 | – | 3.7 | Early phase | 95%CI |
| SARS-CoV [ | Singapore (2003) | - | 2.2 | – | 3.6 | Early phase | Range |
| MERS-CoV [ | South Korea (2012-2013) | 0.91 | 0.36 | – | 1.44 | 95%CI | |
#: assuming 8-fold increase in the reporting rate; ^: assuming 2-fold increase in the reporting rate; * HDI: high density interval; §: SEIR= susceptible-exposed-infectious-recovered; †: start date for exponential growth fixed at 8 Dec 2019; ‡: start date for exponential growth varying between 1–10 Dec 2019; §§: SEIJR = SEIR with J = isolated with treatment; ¶: MLE = maximum likelihood estimation; **: GLEAM = global epidemic and mobility model; ## SLIR = susceptible-latent-infectious-recovered
Figure 2Projected final attack rate based on the basic reproduction number (Ro) estimates from: (A) published and (B) preprint articles, assuming no interventions are implemented.
Estimated incubation period from selected studies.
| Author | Country/Region | Sample Size | Estimate | Uncertainty | |||
|---|---|---|---|---|---|---|---|
| Published (2020) | |||||||
| Li et al. [ | Wuhan | 10 cases | 5.2 | 4.1 | – | 7.0 | 95% CI |
| Backer et al. [ | Outside Wuhan | 88 cases | 6.4 | 5.6 | – | 7.7 | 95% CI |
| Linton et al. [ | Wuhan | 158 cases | 5.6 | 5.0 | – | 6.3 | 95% CI |
| Linton et al. [ | Outside Wuhan | 52 cases | 5.0 | 4.2 | – | 6.0 | 95% CI |
| Ki [ | South Korea | 22 cases | 3.6 | 1.0 | – | 9.0 | Range |
| Jiang et al. [ | Global | 50 cases | 4.9 | 4.4 | – | 5.5 | 95% CI |
| Guan et al. * [ | China | 291 cases | 4.0 | 2.0 | – | 7.0 | IQR |
| Preprint | |||||||
| Lauer et al. [ | Global (excl. Hubei) | 101 cases | 5.2 | 4.4 | – | 6.0 | 95% CI |
| Zhang et al. [ | China (excl. Hubei) | 49 cases | 5.2 | 1.8 | – | 12.4 | 95% CI |
| Comparison with SARS-CoV and MERS-CoV | |||||||
| SARS-CoV (2003) [ | Hong Kong | 4.4 | |||||
| MERS-CoV (2012-3) [ | Global | 5.5 | 3.6 | – | 10.2 | 95% CI | |
| MERS-CoV (2015) [ | South Korea | 6.7 | 6.1 | – | 7.3 | 95% CI | |
*: The study was initially included as a preprint but has been moved to ‘Published’ as it was published on 28 February 2020.
Estimated serial interval from selected studies.
| Author | Country | Sample Size | Estimate | 95% CI | ||
|---|---|---|---|---|---|---|
| Published (2020) | ||||||
| Li et al. [ | Wuhan | 6 pairs | 7.5 | 5.3 | – | 19.0 |
| Ki [ | Korea | 7 pairs | 4.6 | 3.0 | – | 9.0 |
| Preprint | ||||||
| Du et al. [ | China (excl. Hubei) | 468 pairs | 3.96 | 3.53 | – | 4.39 |
| Zhang et al. [ | China (excl. Hubei) | 35 pairs | 5.1 | 1.3 | – | 11.6 |
| Nishiura et al. [ | Global | 28 pairs | 4.0 | 3.1 | – | 4.9 |
| Nishiura et al. [ | Global | 18 pairs | 4.6 | 3.5 | – | 5.9 |
| S. Zhao et al. [ | Hong Kong | 21 pairs | 4.4 | 2.9 | – | 6.7 |
| Comparison with SARS-CoV and MERS-CoV | ||||||
| SARS-CoV (2003) [ | Singapore | 8.4 | - | - | ||
| MERS-CoV (2013) [ | Saudi Arabia | 7.6 | 2.5 | – | 23.1 | |
| MERS-CoV (2015) [ | South Korea | 12.6 | 12.1 | – | 13.1 | |