Literature DB >> 32241893

CtIP promotes the motor activity of DNA2 to accelerate long-range DNA end resection.

Ilaria Ceppi1,2, Sean M Howard1, Kristina Kasaciunaite3, Cosimo Pinto4, Roopesh Anand1, Ralf Seidel3, Petr Cejka5,2.   

Abstract

To repair a DNA double-strand break by homologous recombination, 5'-terminated DNA strands must first be resected to reveal 3'-overhangs. This process is initiated by a short-range resection catalyzed by MRE11-RAD50-NBS1 (MRN) stimulated by CtIP, which is followed by a long-range step involving EXO1 or DNA2 nuclease. DNA2 is a bifunctional enzyme that contains both single-stranded DNA (ssDNA)-specific nuclease and motor activities. Upon DNA unwinding by Bloom (BLM) or Werner (WRN) helicase, RPA directs the DNA2 nuclease to degrade the 5'-strand. RPA bound to ssDNA also represents a barrier, explaining the need for the motor activity of DNA2 to displace RPA prior to resection. Using ensemble and single-molecule biochemistry, we show that CtIP also dramatically stimulates the adenosine 5'-triphosphate (ATP) hydrolysis-driven motor activity of DNA2 involved in the long-range resection step. This activation in turn strongly promotes the degradation of RPA-coated ssDNA by DNA2. Accordingly, the stimulatory effect of CtIP is only observed with wild-type DNA2, but not the helicase-deficient variant. Similarly to the function of CtIP to promote MRN, also the DNA2 stimulatory effect is facilitated by CtIP phosphorylation. The domain of CtIP required to promote DNA2 is located in the central region lacking in lower eukaryotes and is fully separable from domains involved in the stimulation of MRN. These results establish how CtIP couples both MRE11-dependent short-range and DNA2-dependent long-range resection and define the involvement of the motor activity of DNA2 in this process. Our data might help explain the less severe resection defects of MRE11 nuclease-deficient cells compared to those lacking CtIP.

Entities:  

Keywords:  DNA; DNA end resection; helicase; homologous recombination; nuclease

Year:  2020        PMID: 32241893     DOI: 10.1073/pnas.2001165117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

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Authors:  Brit-Maren Michaud Schjeide; Maren Schenke; Bettina Seeger; Gerhard Paul Püschel
Journal:  Methods Protoc       Date:  2022-05-25

Review 2.  DNA end resection during homologous recombination.

Authors:  Robert Gnügge; Lorraine S Symington
Journal:  Curr Opin Genet Dev       Date:  2021-07-28       Impact factor: 5.578

3.  CtIP suppresses primary microRNA maturation and promotes metastasis of colon cancer cells in a xenograft mouse model.

Authors:  Jianping Ren; Yan Wu; Ya Wang; Yuqin Zhao; Youhang Li; Shuailin Hao; Lixiu Lin; Shuyuan Zhang; Xingzhi Xu; Hailong Wang
Journal:  J Biol Chem       Date:  2021-04-23       Impact factor: 5.157

4.  Phf5a regulates DNA repair in class switch recombination via p400 and histone H2A variant deposition.

Authors:  Nasim A Begum; Farazul Haque; Andre Stanlie; Afzal Husain; Samiran Mondal; Mikiyo Nakata; Takako Taniguchi; Hisaaki Taniguchi; Tasuku Honjo
Journal:  EMBO J       Date:  2021-05-03       Impact factor: 14.012

Review 5.  CST in maintaining genome stability: Beyond telomeres.

Authors:  Xinxing Lyu; Pau Biak Sang; Weihang Chai
Journal:  DNA Repair (Amst)       Date:  2021-03-22

Review 6.  DNA Double Strand Break Repair and Its Control by Nucleosome Remodeling.

Authors:  Leonhard Andreas Karl; Martina Peritore; Lorenzo Galanti; Boris Pfander
Journal:  Front Genet       Date:  2022-01-12       Impact factor: 4.599

7.  Distinct RPA domains promote recruitment and the helicase-nuclease activities of Dna2.

Authors:  Ananya Acharya; Kristina Kasaciunaite; Martin Göse; Vera Kissling; Raphaël Guérois; Ralf Seidel; Petr Cejka
Journal:  Nat Commun       Date:  2021-11-11       Impact factor: 14.919

Review 8.  The formation and repair of DNA double-strand breaks in mammalian meiosis.

Authors:  Wei Qu; Cong Liu; Ya-Ting Xu; Yu-Min Xu; Meng-Cheng Luo
Journal:  Asian J Androl       Date:  2021 Nov-Dec       Impact factor: 3.285

Review 9.  Homologous recombination deficiency: how genomic signatures are generated.

Authors:  Jeremy Setton; Jorge S Reis-Filho; Simon N Powell
Journal:  Curr Opin Genet Dev       Date:  2021-01-18       Impact factor: 5.578

10.  Deciphering the mechanism of processive ssDNA digestion by the Dna2-RPA ensemble.

Authors:  Jiangchuan Shen; Yiling Zhao; Nhung Tuyet Pham; Yuxi Li; Yixiang Zhang; Jonathan Trinidad; Grzegorz Ira; Zhi Qi; Hengyao Niu
Journal:  Nat Commun       Date:  2022-01-18       Impact factor: 14.919

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