Literature DB >> 32238928

Fundamental bounds on the fidelity of sensory cortical coding.

Oleg I Rumyantsev1,2,3, Jérôme A Lecoq4,5,6,7, Oscar Hernandez4,5, Yanping Zhang4,5,8, Joan Savall4,5,8, Radosław Chrapkiewicz4,5, Jane Li4,6, Hongkui Zeng7, Surya Ganguli9,10, Mark J Schnitzer11,12,13,14,15.   

Abstract

How the brain processes information accurately despite stochastic neural activity is a longstanding question1. For instance, perception is fundamentally limited by the information that the brain can extract from the noisy dynamics of sensory neurons. Seminal experiments2,3 suggest that correlated noise in sensory cortical neural ensembles is what limits their coding accuracy4-6, although how correlated noise affects neural codes remains debated7-11. Recent theoretical work proposes that how a neural ensemble's sensory tuning properties relate statistically to its correlated noise patterns is a greater determinant of coding accuracy than is absolute noise strength12-14. However, without simultaneous recordings from thousands of cortical neurons with shared sensory inputs, it is unknown whether correlated noise limits coding fidelity. Here we present a 16-beam, two-photon microscope to monitor activity across the mouse primary visual cortex, along with analyses to quantify the information conveyed by large neural ensembles. We found that, in the visual cortex, correlated noise constrained signalling for ensembles with 800-1,300 neurons. Several noise components of the ensemble dynamics grew proportionally to the ensemble size and the encoded visual signals, revealing the predicted information-limiting correlations12-14. Notably, visual signals were perpendicular to the largest noise mode, which therefore did not limit coding fidelity. The information-limiting noise modes were approximately ten times smaller and concordant with mouse visual acuity15. Therefore, cortical design principles appear to enhance coding accuracy by restricting around 90% of noise fluctuations to modes that do not limit signalling fidelity, whereas much weaker correlated noise modes inherently bound sensory discrimination.

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Year:  2020        PMID: 32238928     DOI: 10.1038/s41586-020-2130-2

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  50 in total

1.  The analysis of visual motion: a comparison of neuronal and psychophysical performance.

Authors:  K H Britten; M N Shadlen; W T Newsome; J A Movshon
Journal:  J Neurosci       Date:  1992-12       Impact factor: 6.167

2.  The effect of noise correlations in populations of diversely tuned neurons.

Authors:  Alexander S Ecker; Philipp Berens; Andreas S Tolias; Matthias Bethge
Journal:  J Neurosci       Date:  2011-10-05       Impact factor: 6.167

3.  Origin of information-limiting noise correlations.

Authors:  Ingmar Kanitscheider; Ruben Coen-Cagli; Alexandre Pouget
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

Review 4.  Neural correlations, population coding and computation.

Authors:  Bruno B Averbeck; Peter E Latham; Alexandre Pouget
Journal:  Nat Rev Neurosci       Date:  2006-05       Impact factor: 34.870

5.  Implications of neuronal diversity on population coding.

Authors:  Maoz Shamir; Haim Sompolinsky
Journal:  Neural Comput       Date:  2006-08       Impact factor: 2.026

6.  The effect of correlated variability on the accuracy of a population code.

Authors:  L F Abbott; P Dayan
Journal:  Neural Comput       Date:  1999-01-01       Impact factor: 2.026

Review 7.  The 'Ideal Homunculus': decoding neural population signals.

Authors:  M W Oram; P Földiák; D I Perrett; F Sengpiel
Journal:  Trends Neurosci       Date:  1998-06       Impact factor: 13.837

Review 8.  Measuring and interpreting neuronal correlations.

Authors:  Marlene R Cohen; Adam Kohn
Journal:  Nat Neurosci       Date:  2011-06-27       Impact factor: 24.884

9.  Neuronal correlates of a perceptual decision.

Authors:  W T Newsome; K H Britten; J A Movshon
Journal:  Nature       Date:  1989-09-07       Impact factor: 49.962

10.  Correlated neuronal discharge rate and its implications for psychophysical performance.

Authors:  E Zohary; M N Shadlen; W T Newsome
Journal:  Nature       Date:  1994-07-14       Impact factor: 49.962

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  32 in total

1.  Low rank mechanisms underlying flexible visual representations.

Authors:  Douglas A Ruff; Cheng Xue; Lily E Kramer; Faisal Baqai; Marlene R Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-24       Impact factor: 11.205

2.  Emergent reliability in sensory cortical coding and inter-area communication.

Authors:  Sadegh Ebrahimi; Jérôme Lecoq; Oleg Rumyantsev; Tugce Tasci; Yanping Zhang; Cristina Irimia; Jane Li; Surya Ganguli; Mark J Schnitzer
Journal:  Nature       Date:  2022-05-19       Impact factor: 49.962

Review 3.  Fluorescence imaging of large-scale neural ensemble dynamics.

Authors:  Tony Hyun Kim; Mark J Schnitzer
Journal:  Cell       Date:  2022-01-06       Impact factor: 41.582

4.  Task-induced neural covariability as a signature of approximate Bayesian learning and inference.

Authors:  Richard D Lange; Ralf M Haefner
Journal:  PLoS Comput Biol       Date:  2022-03-08       Impact factor: 4.475

5.  High-speed, cortex-wide volumetric recording of neuroactivity at cellular resolution using light beads microscopy.

Authors:  Jeffrey Demas; Jason Manley; Frank Tejera; Kevin Barber; Hyewon Kim; Francisca Martínez Traub; Brandon Chen; Alipasha Vaziri
Journal:  Nat Methods       Date:  2021-08-30       Impact factor: 28.547

Review 6.  How learning unfolds in the brain: toward an optimization view.

Authors:  Jay A Hennig; Emily R Oby; Darby M Losey; Aaron P Batista; Byron M Yu; Steven M Chase
Journal:  Neuron       Date:  2021-10-13       Impact factor: 17.173

7.  Correlations enhance the behavioral readout of neural population activity in association cortex.

Authors:  Martina Valente; Giuseppe Pica; Giulio Bondanelli; Monica Moroni; Caroline A Runyan; Ari S Morcos; Christopher D Harvey; Stefano Panzeri
Journal:  Nat Neurosci       Date:  2021-05-13       Impact factor: 24.884

8.  Performance in even a simple perceptual task depends on mouse secondary visual areas.

Authors:  Hannah C Goldbach; Bradley Akitake; Caitlin E Leedy; Mark H Histed
Journal:  Elife       Date:  2021-02-01       Impact factor: 8.140

9.  Modelling the neural code in large populations of correlated neurons.

Authors:  Sacha Sokoloski; Amir Aschner; Ruben Coen-Cagli
Journal:  Elife       Date:  2021-10-05       Impact factor: 8.140

10.  Cortical Observation by Synchronous Multifocal Optical Sampling Reveals Widespread Population Encoding of Actions.

Authors:  Isaac V Kauvar; Timothy A Machado; Elle Yuen; John Kochalka; Minseung Choi; William E Allen; Gordon Wetzstein; Karl Deisseroth
Journal:  Neuron       Date:  2020-05-19       Impact factor: 17.173

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