Literature DB >> 32238408

A Systematic Analysis of Interactions between Environmental Risk Factors and Genetic Variation in Susceptibility to Colorectal Cancer.

Maria Timofeeva1,2, Evropi Theodoratou3,4, Tian Yang5,4, Xue Li5, Susan M Farrington4,2, Malcolm G Dunlop4,2, Harry Campbell5.   

Abstract

BACKGROUND: The underlying etiology of colorectal cancer includes both genetic variation and environmental exposures. The main aim of this study was to search for interaction effects between well-established environmental risk factors and published common genetic variants exerting main effects on colorectal cancer risk.
METHODS: We used a two-phase approach: (i) discovery phase (2,652 incident colorectal cancer cases and 10,608 controls from UK Biobank) and (ii) validation phase (1,656 cases and 2,497 controls from the Study of Colorectal Cancer in Scotland). Interactions with nominal P < 0.05 in phase I were taken forward for validation in phase II. Furthermore, we constructed a weighted genetic risk score (GRS) of colorectal cancer risk for each individual and studied interactions between the GRS and the environmental risk factors.
RESULTS: Seventy of the 1,500 tested interactions were nominally significant in phase I. After testing these 70 interactions in phase II, an interaction between rs11903757 (2q32.3) and body mass index (BMI) was nominally significant (P = 0.02) with the same direction of effect. The rs11903757*BMI interaction was also significant (ratio of ORs = 1.26; 95% confidence interval, 1.10-1.44; P interaction = 6.03 × 10-4; P heterogeneity = 0.63) in a meta-analysis combining results from both phases. No interactions were significant in phase II after accounting for multiple testing. No interactions involving the GRS were found with statistical significance.
CONCLUSIONS: Limited evidence of gene-environment interactions in colorectal cancer risk was observed. There are potential modifications of the rs11903757 effect by BMI on colorectal cancer risk. IMPACT: Our findings might contribute to identifying subpopulations with different susceptibility to the effect of BMI on colorectal cancer risk. ©2020 American Association for Cancer Research.

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Year:  2020        PMID: 32238408      PMCID: PMC7311198          DOI: 10.1158/1055-9965.EPI-19-1328

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  30 in total

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Review 2.  Eukaryotic single-stranded DNA binding proteins: central factors in genome stability.

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3.  Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases.

Authors:  Muin J Khoury; Lars Bertram; Paolo Boffetta; Adam S Butterworth; Stephen J Chanock; Siobhan M Dolan; Isabel Fortier; Montserrat Garcia-Closas; Marta Gwinn; Julian P T Higgins; A Cecile J W Janssens; James Ostell; Ryan P Owen; Roberta A Pagon; Timothy R Rebbeck; Nathaniel Rothman; Jonine L Bernstein; Paul R Burton; Harry Campbell; Anand Chockalingam; Helena Furberg; Julian Little; Thomas R O'Brien; Daniela Seminara; Paolo Vineis; Deborah M Winn; Wei Yu; John P A Ioannidis
Journal:  Am J Epidemiol       Date:  2009-06-04       Impact factor: 4.897

4.  Single-stranded DNA-binding protein hSSB1 is critical for genomic stability.

Authors:  Derek J Richard; Emma Bolderson; Liza Cubeddu; Ross I M Wadsworth; Kienan Savage; Girdhar G Sharma; Matthew L Nicolette; Sergie Tsvetanov; Michael J McIlwraith; Raj K Pandita; Shunichi Takeda; Ronald T Hay; Jean Gautier; Stephen C West; Tanya T Paull; Tej K Pandita; Malcolm F White; Kum Kum Khanna
Journal:  Nature       Date:  2008-04-30       Impact factor: 49.962

5.  Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.

Authors:  Freddie Bray; Jacques Ferlay; Isabelle Soerjomataram; Rebecca L Siegel; Lindsey A Torre; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2018-09-12       Impact factor: 508.702

Review 6.  Assessment of cumulative evidence on genetic associations: interim guidelines.

Authors:  John P A Ioannidis; Paolo Boffetta; Julian Little; Thomas R O'Brien; Andre G Uitterlinden; Paolo Vineis; David J Balding; Anand Chokkalingam; Siobhan M Dolan; W Dana Flanders; Julian P T Higgins; Mark I McCarthy; David H McDermott; Grier P Page; Timothy R Rebbeck; Daniela Seminara; Muin J Khoury
Journal:  Int J Epidemiol       Date:  2007-09-26       Impact factor: 7.196

7.  Discovery of common and rare genetic risk variants for colorectal cancer.

Authors:  Jeroen R Huyghe; Stephanie A Bien; Tabitha A Harrison; Hyun Min Kang; Sai Chen; Stephanie L Schmit; David V Conti; Conghui Qu; Jihyoun Jeon; Christopher K Edlund; Peyton Greenside; Michael Wainberg; Fredrick R Schumacher; Joshua D Smith; David M Levine; Sarah C Nelson; Nasa A Sinnott-Armstrong; Demetrius Albanes; M Henar Alonso; Kristin Anderson; Coral Arnau-Collell; Volker Arndt; Christina Bamia; Barbara L Banbury; John A Baron; Sonja I Berndt; Stéphane Bézieau; D Timothy Bishop; Juergen Boehm; Heiner Boeing; Hermann Brenner; Stefanie Brezina; Stephan Buch; Daniel D Buchanan; Andrea Burnett-Hartman; Katja Butterbach; Bette J Caan; Peter T Campbell; Christopher S Carlson; Sergi Castellví-Bel; Andrew T Chan; Jenny Chang-Claude; Stephen J Chanock; Maria-Dolores Chirlaque; Sang Hee Cho; Charles M Connolly; Amanda J Cross; Katarina Cuk; Keith R Curtis; Albert de la Chapelle; Kimberly F Doheny; David Duggan; Douglas F Easton; Sjoerd G Elias; Faye Elliott; Dallas R English; Edith J M Feskens; Jane C Figueiredo; Rocky Fischer; Liesel M FitzGerald; David Forman; Manish Gala; Steven Gallinger; W James Gauderman; Graham G Giles; Elizabeth Gillanders; Jian Gong; Phyllis J Goodman; William M Grady; John S Grove; Andrea Gsur; Marc J Gunter; Robert W Haile; Jochen Hampe; Heather Hampel; Sophia Harlid; Richard B Hayes; Philipp Hofer; Michael Hoffmeister; John L Hopper; Wan-Ling Hsu; Wen-Yi Huang; Thomas J Hudson; David J Hunter; Gemma Ibañez-Sanz; Gregory E Idos; Roxann Ingersoll; Rebecca D Jackson; Eric J Jacobs; Mark A Jenkins; Amit D Joshi; Corinne E Joshu; Temitope O Keku; Timothy J Key; Hyeong Rok Kim; Emiko Kobayashi; Laurence N Kolonel; Charles Kooperberg; Tilman Kühn; Sébastien Küry; Sun-Seog Kweon; Susanna C Larsson; Cecelia A Laurie; Loic Le Marchand; Suzanne M Leal; Soo Chin Lee; Flavio Lejbkowicz; Mathieu Lemire; Christopher I Li; Li Li; Wolfgang Lieb; Yi Lin; Annika Lindblom; Noralane M Lindor; Hua Ling; Tin L Louie; Satu Männistö; Sanford D Markowitz; Vicente Martín; Giovanna Masala; Caroline E McNeil; Marilena Melas; Roger L Milne; Lorena Moreno; Neil Murphy; Robin Myte; Alessio Naccarati; Polly A Newcomb; Kenneth Offit; Shuji Ogino; N Charlotte Onland-Moret; Barbara Pardini; Patrick S Parfrey; Rachel Pearlman; Vittorio Perduca; Paul D P Pharoah; Mila Pinchev; Elizabeth A Platz; Ross L Prentice; Elizabeth Pugh; Leon Raskin; Gad Rennert; Hedy S Rennert; Elio Riboli; Miguel Rodríguez-Barranco; Jane Romm; Lori C Sakoda; Clemens Schafmayer; Robert E Schoen; Daniela Seminara; Mitul Shah; Tameka Shelford; Min-Ho Shin; Katerina Shulman; Sabina Sieri; Martha L Slattery; Melissa C Southey; Zsofia K Stadler; Christa Stegmaier; Yu-Ru Su; Catherine M Tangen; Stephen N Thibodeau; Duncan C Thomas; Sushma S Thomas; Amanda E Toland; Antonia Trichopoulou; Cornelia M Ulrich; David J Van Den Berg; Franzel J B van Duijnhoven; Bethany Van Guelpen; Henk van Kranen; Joseph Vijai; Kala Visvanathan; Pavel Vodicka; Ludmila Vodickova; Veronika Vymetalkova; Korbinian Weigl; Stephanie J Weinstein; Emily White; Aung Ko Win; C Roland Wolf; Alicja Wolk; Michael O Woods; Anna H Wu; Syed H Zaidi; Brent W Zanke; Qing Zhang; Wei Zheng; Peter C Scacheri; John D Potter; Michael C Bassik; Anshul Kundaje; Graham Casey; Victor Moreno; Goncalo R Abecasis; Deborah A Nickerson; Stephen B Gruber; Li Hsu; Ulrike Peters
Journal:  Nat Genet       Date:  2018-12-03       Impact factor: 41.307

8.  Dietary vitamin B6 intake and the risk of colorectal cancer.

Authors:  Evropi Theodoratou; Susan M Farrington; Albert Tenesa; Geraldine McNeill; Roseanne Cetnarskyj; Rebecca A Barnetson; Mary E Porteous; Malcolm G Dunlop; Harry Campbell
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2008-01       Impact factor: 4.254

9.  Current Challenges and New Opportunities for Gene-Environment Interaction Studies of Complex Diseases.

Authors:  Kimberly McAllister; Leah E Mechanic; Christopher Amos; Hugues Aschard; Ian A Blair; Nilanjan Chatterjee; David Conti; W James Gauderman; Li Hsu; Carolyn M Hutter; Marta M Jankowska; Jacqueline Kerr; Peter Kraft; Stephen B Montgomery; Bhramar Mukherjee; George J Papanicolaou; Chirag J Patel; Marylyn D Ritchie; Beate R Ritz; Duncan C Thomas; Peng Wei; John S Witte
Journal:  Am J Epidemiol       Date:  2017-10-01       Impact factor: 5.363

10.  Incorporation of Biological Knowledge Into the Study of Gene-Environment Interactions.

Authors:  Marylyn D Ritchie; Joe R Davis; Hugues Aschard; Alexis Battle; David Conti; Mengmeng Du; Eleazar Eskin; M Daniele Fallin; Li Hsu; Peter Kraft; Jason H Moore; Brandon L Pierce; Stephanie A Bien; Duncan C Thomas; Peng Wei; Stephen B Montgomery
Journal:  Am J Epidemiol       Date:  2017-10-01       Impact factor: 5.363

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1.  Alcohol consumption, polygenic risk score, and early- and late-onset colorectal cancer risk.

Authors:  Xuechen Chen; Hengjing Li; Feng Guo; Michael Hoffmeister; Hermann Brenner
Journal:  EClinicalMedicine       Date:  2022-05-20

2.  Smoking, Genetic Predisposition, and Colorectal Cancer Risk.

Authors:  Xuechen Chen; Lina Jansen; Feng Guo; Michael Hoffmeister; Jenny Chang-Claude; Hermann Brenner
Journal:  Clin Transl Gastroenterol       Date:  2021-03-01       Impact factor: 4.396

Review 3.  Biochemical Markers of Colorectal Cancer - Present and Future.

Authors:  Wojciech Jelski; Barbara Mroczko
Journal:  Cancer Manag Res       Date:  2020-06-22       Impact factor: 3.989

4.  Correlation between lncRNA SNHG16 gene polymorphism and its interaction with environmental factors and susceptibility to colorectal cancer.

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Journal:  Medicine (Baltimore)       Date:  2020-11-25       Impact factor: 1.889

5.  Ethnicity Influences Risk of Inflammatory Bowel Disease (IBD)-Associated Colon Cancer: A Cross-sectional Analysis of Dysplasia Prevalence and Risk Factors in Hispanics and Non-Hispanic Whites With IBD.

Authors:  Oriana M Damas; Gabriella Raffa; Derek Estes; Grechen Mills; David Kerman; Ana Palacio; Seth J Schwartz; Amar R Deshpande; Maria T Abreu
Journal:  Crohns Colitis 360       Date:  2021-05-04

6.  Red and Processed Meat Intake, Polygenic Risk Score, and Colorectal Cancer Risk.

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7.  Geospatial Assessment of Pesticide Concentration in Ambient Air and Colorectal Cancer Incidence in Arkansas, 2013-2017.

Authors:  Lihchyun Joseph Su; Sean G Young; Josephine Collins; Eryn Matich; Ping-Ching Hsu; Tung-Chin Chiang
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