Literature DB >> 32217738

Unraveling the iterative type I polyketide synthases hidden in Streptomyces.

Bin Wang1, Fang Guo2, Chunshuai Huang1, Huimin Zhao3,2,4,5.   

Abstract

Type I polyketide synthases (T1PKSs) are one of the most extensively studied PKSs, which can act either iteratively or via an assembly-line mechanism. Domains in the T1PKSs can readily be predicted by computational tools based on their highly conserved sequences. However, to distinguish between iterative and noniterative at the module level remains an overwhelming challenge, which may account for the seemingly biased distribution of T1PKSs in fungi and bacteria: small iterative monomodular T1PKSs that are responsible for the enormously diverse fungal natural products exist almost exclusively in fungi. Here we report the discovery of iterative T1PKSs that are unexpectedly both abundant and widespread in Streptomyces Seven of 11 systematically selected T1PKS monomodules from monomodular T1PKS biosynthetic gene clusters (BGCs) were experimentally confirmed to be iteratively acting, synthesizing diverse branched/nonbranched linear intermediates, and two of them produced bioactive allenic polyketides and citreodiols as end products, respectively. This study indicates the huge potential of iterative T1PKS BGCs from streptomycetes in the discovery of novel polyketides.

Entities:  

Keywords:  biosynthetic gene clusters; iterative; natural product discovery; polyketide synthase

Mesh:

Substances:

Year:  2020        PMID: 32217738      PMCID: PMC7165468          DOI: 10.1073/pnas.1917664117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes.

Authors:  Scott Kroken; N Louise Glass; John W Taylor; O C Yoder; B Gillian Turgeon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-15       Impact factor: 11.205

Review 2.  The structures of type I polyketide synthases.

Authors:  Adrian T Keatinge-Clay
Journal:  Nat Prod Rep       Date:  2012-08-03       Impact factor: 13.423

Review 3.  The architectures of iterative type I PKS and FAS.

Authors:  Dominik A Herbst; Craig A Townsend; Timm Maier
Journal:  Nat Prod Rep       Date:  2018-10-17       Impact factor: 13.423

4.  Aryl Polyenes, a Highly Abundant Class of Bacterial Natural Products, Are Functionally Related to Antioxidative Carotenoids.

Authors:  Tim A Schöner; Sören Gassel; Ayako Osawa; Nicholas J Tobias; Yukari Okuno; Yui Sakakibara; Kazutoshi Shindo; Gerhard Sandmann; Helge B Bode
Journal:  Chembiochem       Date:  2016-01-05       Impact factor: 3.164

5.  Navigating the fungal polyketide chemical space: from genes to molecules.

Authors:  Yit-Heng Chooi; Yi Tang
Journal:  J Org Chem       Date:  2012-09-13       Impact factor: 4.354

6.  Type I polyketide synthase requiring a discrete acyltransferase for polyketide biosynthesis.

Authors:  Yi-Qiang Cheng; Gong-Li Tang; Ben Shen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-21       Impact factor: 11.205

Review 7.  Recent advances in the biosynthesis of unusual polyketide synthase substrates.

Authors:  Lauren Ray; Bradley S Moore
Journal:  Nat Prod Rep       Date:  2016-02       Impact factor: 13.423

Review 8.  Iterative polyketide biosynthesis by modular polyketide synthases in bacteria.

Authors:  Haotong Chen; Liangcheng Du
Journal:  Appl Microbiol Biotechnol       Date:  2015-11-09       Impact factor: 4.813

9.  Amycomicin is a potent and specific antibiotic discovered with a targeted interaction screen.

Authors:  Gleb Pishchany; Emily Mevers; Sula Ndousse-Fetter; Dennis J Horvath; Camila R Paludo; Eduardo A Silva-Junior; Sergey Koren; Eric P Skaar; Jon Clardy; Roberto Kolter
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-18       Impact factor: 11.205

10.  Automated genome mining for natural products.

Authors:  Michael H T Li; Peter M U Ung; James Zajkowski; Sylvie Garneau-Tsodikova; David H Sherman
Journal:  BMC Bioinformatics       Date:  2009-06-16       Impact factor: 3.169

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  11 in total

1.  The Streptomyces viridochromogenes product template domain represents an evolutionary intermediate between dehydratase and aldol cyclase of type I polyketide synthases.

Authors:  Yuanyuan Feng; Xu Yang; Huining Ji; Zixin Deng; Shuangjun Lin; Jianting Zheng
Journal:  Commun Biol       Date:  2022-05-26

2.  Genome mining Streptomyces sp. KCTC 0041BP as a producer of dihydrochalcomycin.

Authors:  Chung Thanh Nguyen; Adzemye Fovennso Bridget; Van Thuy Thi Pham; Hue Thi Nguyen; Tae-Su Kim; Jae Kyung Sohng
Journal:  Appl Microbiol Biotechnol       Date:  2021-06-17       Impact factor: 4.813

3.  Properties of a "Split-and-Stuttering" Module of an Assembly Line Polyketide Synthase.

Authors:  Katarina M Guzman; Kai P Yuet; Stephen R Lynch; Corey W Liu; Chaitan Khosla
Journal:  J Org Chem       Date:  2021-03-23       Impact factor: 4.198

4.  Cas12a-assisted precise targeted cloning using in vivo Cre-lox recombination.

Authors:  Behnam Enghiad; Chunshuai Huang; Fang Guo; Guangde Jiang; Bin Wang; S Kasra Tabatabaei; Teresa A Martin; Huimin Zhao
Journal:  Nat Commun       Date:  2021-02-19       Impact factor: 14.919

5.  Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian.

Authors:  Nicole E Avalon; Alison E Murray; Hajnalka E Daligault; Chien-Chi Lo; Karen W Davenport; Armand E K Dichosa; Patrick S G Chain; Bill J Baker
Journal:  Front Chem       Date:  2021-12-24       Impact factor: 5.221

6.  Synthesis, In Silico Prediction and In Vitro Evaluation of Antimicrobial Activity, DFT Calculation and Theoretical Investigation of Novel Xanthines and Uracil Containing Imidazolone Derivatives.

Authors:  Samar El-Kalyoubi; Fatimah Agili; Wael A Zordok; Ashraf S A El-Sayed
Journal:  Int J Mol Sci       Date:  2021-10-12       Impact factor: 5.923

7.  Complete Genome Sequence of Two Deep-Sea Streptomyces Isolates from Madeira Archipelago and Evaluation of Their Biosynthetic Potential.

Authors:  Pedro Albuquerque; Inês Ribeiro; Sofia Correia; Ana Paula Mucha; Paula Tamagnini; Andreia Braga-Henriques; Maria de Fátima Carvalho; Marta V Mendes
Journal:  Mar Drugs       Date:  2021-11-01       Impact factor: 5.118

8.  Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.

Authors:  Snorre Sulheim; Fredrik A Fossheim; Alexander Wentzel; Eivind Almaas
Journal:  BMC Bioinformatics       Date:  2021-02-23       Impact factor: 3.169

9.  Unsaturated fatty acids and a prenylated tryptophan derivative from a rare actinomycete of the genus Couchioplanes.

Authors:  Shun Saito; Kanji Indo; Naoya Oku; Hisayuki Komaki; Masashi Kawasaki; Yasuhiro Igarashi
Journal:  Beilstein J Org Chem       Date:  2021-12-16       Impact factor: 2.883

10.  Characterization and engineering of Streptomyces griseofuscus DSM 40191 as a potential host for heterologous expression of biosynthetic gene clusters.

Authors:  Tetiana Gren; Christopher M Whitford; Omkar S Mohite; Tue S Jørgensen; Eftychia E Kontou; Julie B Nielsen; Sang Yup Lee; Tilmann Weber
Journal:  Sci Rep       Date:  2021-09-15       Impact factor: 4.379

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