Literature DB >> 32213116

CORP: The use of deuterated water for the measurement of protein synthesis.

Benjamin F Miller1, Justin J Reid1, John C Price2, Hsien-Jung L Lin2, Philip J Atherton3, Kenneth Smith3.   

Abstract

The use of deuterium oxide (D2O) has greatly expanded the scope of what is possible for the measurement of protein synthesis. The greatest asset of D2O labeling is that it facilitates the measurement of synthesis rates over prolonged periods of time from single proteins through integrated tissue-based measurements. Because the ease of administration, the method is amenable for use in a variety of models and conditions. Although the method adheres to the same rules as other isotope methods, the flexibility can create conditions that are not the same as other approaches and thus requires careful execution to maintain validity and reliability. For this CORP article, we provide a history that gave rise to the method and discuss the advantages and disadvantages of the method, the critical assumptions, guidelines, and best practices based on instrumentation, models, and experimental design. The goal of this CORP article is to propagate additional use of D2O in a manner that produces reliable and valid data.

Entities:  

Keywords:  protein turnover; stable isotopes; tracer

Mesh:

Substances:

Year:  2020        PMID: 32213116     DOI: 10.1152/japplphysiol.00855.2019

Source DB:  PubMed          Journal:  J Appl Physiol (1985)        ISSN: 0161-7567


  7 in total

1.  Serum extracellular vesicle miR-203a-3p content is associated with skeletal muscle mass and protein turnover during disuse atrophy and regrowth.

Authors:  Douglas W Van Pelt; Ivan J Vechetti; Marcus M Lawrence; Kathryn L Van Pelt; Parth Patel; Benjamin F Miller; Timothy A Butterfield; Esther E Dupont-Versteegden
Journal:  Am J Physiol Cell Physiol       Date:  2020-07-08       Impact factor: 4.249

2.  An In Vivo Stable Isotope Labeling Method to Investigate Individual Matrix Protein Synthesis, Ribosomal Biogenesis, and Cellular Proliferation in Murine Articular Cartilage.

Authors:  Kamil A Kobak; Albert Batushansky; Agnieszka K Borowik; Erika Prado Barboza Lopes; Frederick F Peelor Iii; Elise L Donovan; Michael T Kinter; Benjamin F Miller; Timothy M Griffin
Journal:  Function (Oxf)       Date:  2022-02-25

3.  Protein turnover models for LC-MS data of heavy water metabolic labeling.

Authors:  Rovshan G Sadygov
Journal:  Brief Bioinform       Date:  2022-03-10       Impact factor: 11.622

4.  Systemic delivery of a mitochondria targeted antioxidant partially preserves limb muscle mass and grip strength in response to androgen deprivation.

Authors:  Michael L Rossetti; Kirsten R Dunlap; Gloria Salazar; Robert C Hickner; Jeong-Su Kim; Bryant P Chase; Benjamin F Miller; Bradley S Gordon
Journal:  Mol Cell Endocrinol       Date:  2021-07-07       Impact factor: 4.369

5.  Low amounts of heavy water increase the phase separation propensity of a fragment of the androgen receptor activation domain.

Authors:  Stasė Bielskutė; Carla Garcia-Cabau; Marta Frigolé-Vivas; Elzbieta Szulc; Eva De Mol; Mireia Pesarrodona; Jesús García; Xavier Salvatella
Journal:  Protein Sci       Date:  2021-05-24       Impact factor: 6.993

6.  Determining the contributions of protein synthesis and breakdown to muscle atrophy requires non-steady-state equations.

Authors:  Kamil A Kobak; Marcus M Lawrence; Gavin Pharaoh; Agnieszka K Borowik; Frederick F Peelor; Patrick D Shipman; Timothy M Griffin; Holly Van Remmen; Benjamin F Miller
Journal:  J Cachexia Sarcopenia Muscle       Date:  2021-08-21       Impact factor: 12.910

7.  A Novel Stable Isotope Approach Demonstrates Surprising Degree of Age-Related Decline in Skeletal Muscle Collagen Proteostasis.

Authors:  Claire B Abbott; Marcus M Lawrence; Kamil A Kobak; Erika Barboza Prado Lopes; Frederick F Peelor; Elizabeth J Donald; Holly Van Remmen; Timothy M Griffin; Benjamin F Miller
Journal:  Function (Oxf)       Date:  2021-05-10
  7 in total

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