Literature DB >> 32206983

Role of atomic contacts in vibrational energy transfer in myoglobin.

Misao Mizuno1, Yasuhisa Mizutani2.   

Abstract

Heme proteins are ideal systems to investigate vibrational energy flow at the atomic level. Upon photoexcitation, a large amount of excess vibrational energy is selectively deposited on heme due to extremely fast internal conversion. This excess energy is redistributed to the surrounding protein moiety and then to water. Vibrational energy flow in myoglobin (Mb) was examined using picosecond time-resolved anti-Stokes ultraviolet resonance Raman (UVRR) spectroscopy. We used the Trp residue directly contacting the heme group as a selective probe for vibrationally excited populations. Trp residues were placed at different position close to the heme by site-directed mutagenesis. This technique allows us to monitor the excess energy on residue-to-residue basis. Anti-Stokes UVRR measurements for Mb mutants suggest that the dominant channel for energy transfer in Mb is the pathway through atomic contacts between heme and nearby amino acid residues as well as that between the protein and solvent water. It is found that energy flow through proteins is analogous to collisional exchange processes in solutions.

Entities:  

Keywords:  Atomic contacts; Heme protein; Time-resolved anti-Stokes ultraviolet resonance Raman scattering; Vibrational energy transfer

Year:  2020        PMID: 32206983      PMCID: PMC7242529          DOI: 10.1007/s12551-020-00681-w

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  25 in total

1.  Scaling Rules for Vibrational Energy Transport in Globular Proteins.

Authors:  Sebastian Buchenberg; David M Leitner; Gerhard Stock
Journal:  J Phys Chem Lett       Date:  2015-12-11       Impact factor: 6.475

2.  Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion.

Authors:  Nobuyuki Ota; David A Agard
Journal:  J Mol Biol       Date:  2005-08-12       Impact factor: 5.469

3.  Picosecond protein response to the chromophore isomerization of photoactive yellow protein: selective observation of tyrosine and tryptophan residues by time-resolved ultraviolet resonance Raman spectroscopy.

Authors:  Misao Mizuno; Norio Hamada; Fumio Tokunaga; Yasuhisa Mizutani
Journal:  J Phys Chem B       Date:  2007-05-25       Impact factor: 2.991

4.  Energy flow and long-range correlations in guanine-binding riboswitch: a nonequilibrium molecular dynamics study.

Authors:  Phuong H Nguyen; Philippe Derreumaux; Gerhard Stock
Journal:  J Phys Chem B       Date:  2009-07-09       Impact factor: 2.991

5.  Vibrational energy flow in the villin headpiece subdomain: master equation simulations.

Authors:  David M Leitner; Sebastian Buchenberg; Paul Brettel; Gerhard Stock
Journal:  J Chem Phys       Date:  2015-02-21       Impact factor: 3.488

6.  Scaling of Rates of Vibrational Energy Transfer in Proteins with Equilibrium Dynamics and Entropy.

Authors:  Korey M Reid; Takahisa Yamato; David M Leitner
Journal:  J Phys Chem B       Date:  2018-10-02       Impact factor: 2.991

7.  Importance of Atomic Contacts in Vibrational Energy Flow in Proteins.

Authors:  Masato Kondoh; Misao Mizuno; Yasuhisa Mizutani
Journal:  J Phys Chem Lett       Date:  2016-05-12       Impact factor: 6.475

8.  Energy Transport across Interfaces in Biomolecular Systems.

Authors:  David M Leitner; Hari Datt Pandey; Korey M Reid
Journal:  J Phys Chem B       Date:  2019-10-01       Impact factor: 2.991

9.  Reactivities of oxo and peroxo intermediates studied by hemoprotein mutants.

Authors:  Yoshihito Watanabe; Hiroshi Nakajima; Takafumi Ueno
Journal:  Acc Chem Res       Date:  2007-06-14       Impact factor: 22.384

10.  Molecular dynamics simulation of cooling: heat transfer from a photoexcited peptide to the solvent.

Authors:  Sang-Min Park; Phuong H Nguyen; Gerhard Stock
Journal:  J Chem Phys       Date:  2009-11-14       Impact factor: 3.488

View more
  2 in total

1.  Biophysical Reviews' national biophysical society partnership program.

Authors:  Damien Hall
Journal:  Biophys Rev       Date:  2020-04-29

2.  Tracking Energy Transfer across a Platinum Center.

Authors:  Tammy X Leong; Brenna K Collins; Sourajit Dey Baksi; Robert T Mackin; Artem Sribnyi; Alexander L Burin; John A Gladysz; Igor V Rubtsov
Journal:  J Phys Chem A       Date:  2022-07-26       Impact factor: 2.944

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.