Literature DB >> 32200874

Research Techniques Made Simple: CRISPR Genetic Screens.

Auke B C Otten1, Bryan K Sun2.   

Abstract

CRISPR and Cas proteins, often referred to as CRISPR/Cas, are the components of a bacterial genome editing system that can be used to perturb genes in cells and tissues. A classic application is to use CRISPR/Cas to generate genetic loss-of-function. When performed at large scale and combined with deep sequencing techniques, CRISPR-based perturbations can be performed in a high throughput setting to screen many candidate genomic elements for their roles in a phenotype of interest. Here, we discuss major considerations in the design, execution, and analysis of CRISPR screens. We focus on CRISPR knockout screens but also review adaptations to the CRISPR/Cas system that highlight the versatility of the system to make other types of experimental genetic changes as well. We also discuss examples of CRISPR genetic screens in investigative dermatology and how they may be used to answer key scientific questions in the field.
Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 32200874      PMCID: PMC8525197          DOI: 10.1016/j.jid.2020.01.018

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN: 0022-202X            Impact factor:   8.551


  19 in total

1.  Small Molecule and Pooled CRISPR Screens Investigating IL17 Signaling Identify BRD2 as a Novel Contributor to Keratinocyte Inflammatory Responses.

Authors:  Peter F Slivka; Chen-Lin Hsieh; Alex Lipovsky; Steven D Pratt; John Locklear; Marian T Namovic; Heath A McDonald; Joseph Wetter; Rebecca Edelmayer; Min Hu; Erin Murphy; Marc Domanus; Charles Lu; Ryan Duggan; Jacob King; Victoria E Scott; Diana Donnelly-Roberts; Anthony Slavin; Sujatha Gopalakrishnan; Namjin Chung; Eric R Goedken
Journal:  ACS Chem Biol       Date:  2019-04-15       Impact factor: 5.100

2.  Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9.

Authors:  Gozde Korkmaz; Rui Lopes; Alejandro P Ugalde; Ekaterina Nevedomskaya; Ruiqi Han; Ksenia Myacheva; Wilbert Zwart; Ran Elkon; Reuven Agami
Journal:  Nat Biotechnol       Date:  2016-01-11       Impact factor: 54.908

Review 3.  Am I ready for CRISPR? A user's guide to genetic screens.

Authors:  John G Doench
Journal:  Nat Rev Genet       Date:  2017-12-04       Impact factor: 53.242

4.  Next-Generation Sequencing of Genome-Wide CRISPR Screens.

Authors:  Edwin H Yau; Tariq M Rana
Journal:  Methods Mol Biol       Date:  2018

Review 5.  Research Techniques Made Simple: The Application of CRISPR-Cas9 and Genome Editing in Investigative Dermatology.

Authors:  Joan Ramon Guitart; Jodi L Johnson; Wade W Chien
Journal:  J Invest Dermatol       Date:  2016-09       Impact factor: 8.551

6.  Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

Authors:  John G Doench; Nicolo Fusi; Meagan Sullender; Mudra Hegde; Emma W Vaimberg; Jennifer Listgarten; Katherine F Donovan; Ian Smith; Zuzana Tothova; Craig Wilen; Robert Orchard; Herbert W Virgin; David E Root
Journal:  Nat Biotechnol       Date:  2016-01-18       Impact factor: 54.908

7.  A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis.

Authors:  Pengfei Cai; Auke B C Otten; Binbin Cheng; Mitsuhiro A Ishii; Wen Zhang; Beibei Huang; Kun Qu; Bryan K Sun
Journal:  Genome Res       Date:  2019-12-04       Impact factor: 9.043

8.  CALML5 is a ZNF750- and TINCR-induced protein that binds stratifin to regulate epidermal differentiation.

Authors:  Bryan K Sun; Lisa D Boxer; Julia D Ransohoff; Zurab Siprashvili; Kun Qu; Vanessa Lopez-Pajares; S Tyler Hollmig; Paul A Khavari
Journal:  Genes Dev       Date:  2015-11-01       Impact factor: 11.361

9.  A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies.

Authors:  David K Breslow; Sascha Hoogendoorn; Adam R Kopp; David W Morgens; Brandon K Vu; Margaret C Kennedy; Kyuho Han; Amy Li; Gaelen T Hess; Michael C Bassik; James K Chen; Maxence V Nachury
Journal:  Nat Genet       Date:  2018-02-19       Impact factor: 38.330

10.  MicroRNA-focused CRISPR-Cas9 library screen reveals fitness-associated miRNAs.

Authors:  Jessica S Kurata; Ren-Jang Lin
Journal:  RNA       Date:  2018-05-02       Impact factor: 4.942

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  3 in total

1.  Research Techniques Made Simple: Delivery of the CRISPR/Cas9 Components into Epidermal Cells.

Authors:  Huishan Shi; Jos P H Smits; Ellen H van den Bogaard; Matthew G Brewer
Journal:  J Invest Dermatol       Date:  2021-06       Impact factor: 7.590

Review 2.  SHERLOCK and DETECTR: CRISPR-Cas Systems as Potential Rapid Diagnostic Tools for Emerging Infectious Diseases.

Authors:  Mujahed I Mustafa; Abdelrafie M Makhawi
Journal:  J Clin Microbiol       Date:  2021-02-18       Impact factor: 5.948

Review 3.  CRISPR based therapeutics: a new paradigm in cancer precision medicine.

Authors:  Shehnaz Bano; Prachi Kapse; Sumit Das; Gopal C Kundu
Journal:  Mol Cancer       Date:  2022-03-25       Impact factor: 27.401

  3 in total

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