Literature DB >> 29199283

Am I ready for CRISPR? A user's guide to genetic screens.

John G Doench1.   

Abstract

Exciting new technologies are often self-limiting in their rollout, as access to state-of-the-art instrumentation or the need for years of hands-on experience, for better or worse, ensures slow adoption by the community. CRISPR technology, however, presents the opposite dilemma, where the simplicity of the system enabled the parallel development of many applications, improvements and derivatives, and new users are now presented with an almost paralyzing abundance of choices. This Review intends to guide users through the process of applying CRISPR technology to their biological problems of interest, especially in the context of discovering gene function at scale.

Mesh:

Year:  2017        PMID: 29199283     DOI: 10.1038/nrg.2017.97

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  131 in total

1.  Inducible RNAi in vivo reveals that the transcription factor BATF is required to initiate but not maintain CD8+ T-cell effector differentiation.

Authors:  Jernej Godec; Glenn S Cowley; R Anthony Barnitz; Ozan Alkan; David E Root; Arlene H Sharpe; W Nicholas Haining
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-29       Impact factor: 11.205

Review 2.  Applications of CRISPR genome editing technology in drug target identification and validation.

Authors:  Quinn Lu; George P Livi; Sundip Modha; Kosuke Yusa; Ricardo Macarrón; David J Dow
Journal:  Expert Opin Drug Discov       Date:  2017-04-23       Impact factor: 6.098

Review 3.  Defining and improving the genome-wide specificities of CRISPR-Cas9 nucleases.

Authors:  Shengdar Q Tsai; J Keith Joung
Journal:  Nat Rev Genet       Date:  2016-05       Impact factor: 53.242

4.  A genome-wide CRISPR screen identifies a restricted set of HIV host dependency factors.

Authors:  Ryan J Park; Tim Wang; Dylan Koundakjian; Judd F Hultquist; Pedro Lamothe-Molina; Blandine Monel; Kathrin Schumann; Haiyan Yu; Kevin M Krupzcak; Wilfredo Garcia-Beltran; Alicja Piechocka-Trocha; Nevan J Krogan; Alexander Marson; David M Sabatini; Eric S Lander; Nir Hacohen; Bruce D Walker
Journal:  Nat Genet       Date:  2016-12-19       Impact factor: 38.330

5.  Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells.

Authors:  Yunqing Ma; Jiayuan Zhang; Weijie Yin; Zhenchao Zhang; Yan Song; Xing Chang
Journal:  Nat Methods       Date:  2016-10-10       Impact factor: 28.547

6.  Direct in vivo RNAi screen unveils myosin IIa as a tumor suppressor of squamous cell carcinomas.

Authors:  Daniel Schramek; Ataman Sendoel; Jeremy P Segal; Slobodan Beronja; Evan Heller; Daniel Oristian; Boris Reva; Elaine Fuchs
Journal:  Science       Date:  2014-01-17       Impact factor: 47.728

7.  A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response.

Authors:  Britt Adamson; Thomas M Norman; Marco Jost; Min Y Cho; James K Nuñez; Yuwen Chen; Jacqueline E Villalta; Luke A Gilbert; Max A Horlbeck; Marco Y Hein; Ryan A Pak; Andrew N Gray; Carol A Gross; Atray Dixit; Oren Parnas; Aviv Regev; Jonathan S Weissman
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

8.  APPRIS: annotation of principal and alternative splice isoforms.

Authors:  Jose Manuel Rodriguez; Paolo Maietta; Iakes Ezkurdia; Alessandro Pietrelli; Jan-Jaap Wesselink; Gonzalo Lopez; Alfonso Valencia; Michael L Tress
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

9.  Repurposing the CRISPR-Cas9 system for targeted DNA methylation.

Authors:  Aleksandar Vojta; Paula Dobrinić; Vanja Tadić; Luka Bočkor; Petra Korać; Boris Julg; Marija Klasić; Vlatka Zoldoš
Journal:  Nucleic Acids Res       Date:  2016-03-11       Impact factor: 16.971

10.  Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments.

Authors:  Soren H Hough; Kris Kancleris; Leigh Brody; Neil Humphryes-Kirilov; Joseph Wolanski; Keith Dunaway; Ayokunmi Ajetunmobi; Victor Dillard
Journal:  BMC Bioinformatics       Date:  2017-03-14       Impact factor: 3.169

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  99 in total

Review 1.  CRISPR Tools for Systematic Studies of RNA Regulation.

Authors:  Jesse Engreitz; Omar Abudayyeh; Jonathan Gootenberg; Feng Zhang
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-08-01       Impact factor: 10.005

Review 2.  Genome editing to define the function of risk loci and variants in rheumatic disease.

Authors:  Yuriy Baglaenko; Dana Macfarlane; Alexander Marson; Peter A Nigrovic; Soumya Raychaudhuri
Journal:  Nat Rev Rheumatol       Date:  2021-06-29       Impact factor: 20.543

Review 3.  Design and analysis of CRISPR-Cas experiments.

Authors:  Ruth E Hanna; John G Doench
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

4.  Genome-wide CRISPR Screens in Primary Human T Cells Reveal Key Regulators of Immune Function.

Authors:  Eric Shifrut; Julia Carnevale; Victoria Tobin; Theodore L Roth; Jonathan M Woo; Christina T Bui; P Jonathan Li; Morgan E Diolaiti; Alan Ashworth; Alexander Marson
Journal:  Cell       Date:  2018-11-15       Impact factor: 41.582

Review 5.  Technologies and Computational Analysis Strategies for CRISPR Applications.

Authors:  Kendell Clement; Jonathan Y Hsu; Matthew C Canver; J Keith Joung; Luca Pinello
Journal:  Mol Cell       Date:  2020-07-02       Impact factor: 17.970

Review 6.  A systems approach to infectious disease.

Authors:  Manon Eckhardt; Judd F Hultquist; Robyn M Kaake; Ruth Hüttenhain; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2020-02-14       Impact factor: 53.242

Review 7.  Targeting the cell cycle in breast cancer: towards the next phase.

Authors:  K L Thu; I Soria-Bretones; T W Mak; D W Cescon
Journal:  Cell Cycle       Date:  2018-09-11       Impact factor: 4.534

8.  Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform.

Authors:  Thomas Gonatopoulos-Pournatzis; Michael Aregger; Kevin R Brown; Shaghayegh Farhangmehr; Ulrich Braunschweig; Henry N Ward; Kevin C H Ha; Alexander Weiss; Maximilian Billmann; Tanja Durbic; Chad L Myers; Benjamin J Blencowe; Jason Moffat
Journal:  Nat Biotechnol       Date:  2020-03-16       Impact factor: 54.908

Review 9.  Systems Biochemistry Approaches to Defining Mitochondrial Protein Function.

Authors:  Andrew Y Sung; Brendan J Floyd; David J Pagliarini
Journal:  Cell Metab       Date:  2020-04-07       Impact factor: 27.287

Review 10.  The nuclear export protein XPO1 - from biology to targeted therapy.

Authors:  Asfar S Azmi; Mohammed H Uddin; Ramzi M Mohammad
Journal:  Nat Rev Clin Oncol       Date:  2020-11-10       Impact factor: 66.675

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