Literature DB >> 32196467

Chaotic emperor penguin optimised extreme learning machine for microarray cancer classification.

Santos Kumar Baliarsingh1, Swati Vipsita2.   

Abstract

Microarray technology plays a significant role in cancer classification, where a large number of genes and samples are simultaneously analysed. For the efficient analysis of the microarray data, there is a great demand for the development of intelligent techniques. In this article, the authors propose a novel hybrid technique employing Fisher criterion, ReliefF, and extreme learning machine (ELM) based on the principle of chaotic emperor penguin optimisation algorithm (CEPO). EPO is a recently developed metaheuristic method. In the proposed method, initially, Fisher score and ReliefF are independently used as filters for relevant gene selection. Further, a novel population-based metaheuristic, namely, CEPO was proposed to pre-train the ELM by selecting the optimal input weights and hidden biases. The authors have successfully conducted experiments on seven well-known data sets. To evaluate the effectiveness, the proposed method is compared with original EPO, genetic algorithm, and particle swarm optimisation-based ELM along with other state-of-the-art techniques. The experimental results show that the proposed framework achieves better accuracy as compared to the state-of-the-art schemes. The efficacy of the proposed method is demonstrated in terms of accuracy, sensitivity, specificity, and F-measure.

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Year:  2020        PMID: 32196467      PMCID: PMC8687381          DOI: 10.1049/iet-syb.2019.0028

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  21 in total

1.  Gene selection for microarray cancer classification using a new evolutionary method employing artificial intelligence concepts.

Authors:  M Dashtban; Mohammadali Balafar
Journal:  Genomics       Date:  2017-02-01       Impact factor: 5.736

2.  Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.

Authors:  U Alon; N Barkai; D A Notterman; K Gish; S Ybarra; D Mack; A J Levine
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

3.  Use of proteomic patterns in serum to identify ovarian cancer.

Authors:  Emanuel F Petricoin; Ali M Ardekani; Ben A Hitt; Peter J Levine; Vincent A Fusaro; Seth M Steinberg; Gordon B Mills; Charles Simone; David A Fishman; Elise C Kohn; Lance A Liotta
Journal:  Lancet       Date:  2002-02-16       Impact factor: 79.321

4.  Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.

Authors:  T R Golub; D K Slonim; P Tamayo; C Huard; M Gaasenbeek; J P Mesirov; H Coller; M L Loh; J R Downing; M A Caligiuri; C D Bloomfield; E S Lander
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

5.  Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses.

Authors:  A Bhattacharjee; W G Richards; J Staunton; C Li; S Monti; P Vasa; C Ladd; J Beheshti; R Bueno; M Gillette; M Loda; G Weber; E J Mark; E S Lander; W Wong; B E Johnson; T R Golub; D J Sugarbaker; M Meyerson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

6.  Prediction of drug synergy score using ensemble based differential evolution.

Authors:  Harpreet Singh; Prashant Singh Rana; Urvinder Singh
Journal:  IET Syst Biol       Date:  2019-02       Impact factor: 1.615

7.  Evaluating treatment of osteoporosis using particle swarm on a bone remodelling mathematical model.

Authors:  Andy B Chen; Ping Zhang; Hiroki Yokota
Journal:  IET Syst Biol       Date:  2013-12       Impact factor: 1.615

8.  Lung cancer prediction from microarray data by gene expression programming.

Authors:  Hasseeb Azzawi; Jingyu Hou; Yong Xiang; Russul Alanni
Journal:  IET Syst Biol       Date:  2016-10       Impact factor: 1.615

9.  mRMR-ABC: A Hybrid Gene Selection Algorithm for Cancer Classification Using Microarray Gene Expression Profiling.

Authors:  Hala Alshamlan; Ghada Badr; Yousef Alohali
Journal:  Biomed Res Int       Date:  2015-04-15       Impact factor: 3.411

10.  Cancers classification based on deep neural networks and emotional learning approach.

Authors:  Noushin Jafarpisheh; Mohammad Teshnehlab
Journal:  IET Syst Biol       Date:  2018-12       Impact factor: 1.615

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  1 in total

1.  Mutational Slime Mould Algorithm for Gene Selection.

Authors:  Feng Qiu; Pan Zheng; Ali Asghar Heidari; Guoxi Liang; Huiling Chen; Faten Khalid Karim; Hela Elmannai; Haiping Lin
Journal:  Biomedicines       Date:  2022-08-22
  1 in total

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