Literature DB >> 32195016

Role of tRNA-derived fragments in cancer: novel diagnostic and therapeutic targets tRFs in cancer.

Ping Zhu1, Jerry Yu2, Ping Zhou1.   

Abstract

Recent studies have revealed that tRNAs are not always the terminal molecules and small RNA fragments can be mapped to precursor tRNA sequences or mature tRNA sequences. tRNA-derived fragments (tRFs) are a novel class of small RNAs in miRNA-size found in a diverse range of organisms and can be the source of small regulatory RNAs, a previously unanticipated concept. tRFs have a diverse range of effects on cells involving in cell differentiation and homeostasis. They play a critical role in pathological processes, particularly in cancer, and therefore can modulate complicated regulatory networks. Recent studies on the role of tRFs in tumorigenesis suggest that they are promising targets for diagnosis and therapeutics. Improvement in experimental and computational approaches permit a greater understanding of the regulatory networks and will have a significant impact on both basic and clinical research. AJCR
Copyright © 2020.

Entities:  

Keywords:  cancer; diagnosis; microRNA; piRNA; tRNA-derived fragments; transfer RNA; treatment

Year:  2020        PMID: 32195016      PMCID: PMC7061753     

Source DB:  PubMed          Journal:  Am J Cancer Res        ISSN: 2156-6976            Impact factor:   6.166


  59 in total

Review 1.  Non-coding RNA networks in cancer.

Authors:  Eleni Anastasiadou; Leni S Jacob; Frank J Slack
Journal:  Nat Rev Cancer       Date:  2017-11-24       Impact factor: 60.716

2.  Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.

Authors:  Upasna Sharma; Colin C Conine; Jeremy M Shea; Ana Boskovic; Alan G Derr; Xin Y Bing; Clemence Belleannee; Alper Kucukural; Ryan W Serra; Fengyun Sun; Lina Song; Benjamin R Carone; Emiliano P Ricci; Xin Z Li; Lucas Fauquier; Melissa J Moore; Robert Sullivan; Craig C Mello; Manuel Garber; Oliver J Rando
Journal:  Science       Date:  2015-12-31       Impact factor: 47.728

Review 3.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

4.  Up-regulation of Twist induces angiogenesis and correlates with metastasis in hepatocellular carcinoma.

Authors:  R F Niu; L Zhang; G M Xi; X Y Wei; Y Yang; Y R Shi; X S Hao
Journal:  J Exp Clin Cancer Res       Date:  2007-09

5.  Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers.

Authors:  Jian-You Liao; Li-Ming Ma; Yan-Hua Guo; Yu-Chan Zhang; Hui Zhou; Peng Shao; Yue-Qin Chen; Liang-Hu Qu
Journal:  PLoS One       Date:  2010-05-14       Impact factor: 3.240

6.  Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.

Authors:  Hadi Valadi; Karin Ekström; Apostolos Bossios; Margareta Sjöstrand; James J Lee; Jan O Lötvall
Journal:  Nat Cell Biol       Date:  2007-05-07       Impact factor: 28.824

7.  Twist, a master regulator of morphogenesis, plays an essential role in tumor metastasis.

Authors:  Jing Yang; Sendurai A Mani; Joana Liu Donaher; Sridhar Ramaswamy; Raphael A Itzykson; Christophe Come; Pierre Savagner; Inna Gitelman; Andrea Richardson; Robert A Weinberg
Journal:  Cell       Date:  2004-06-25       Impact factor: 41.582

8.  Dysregulation of a family of short noncoding RNAs, tsRNAs, in human cancer.

Authors:  Yuri Pekarsky; Veronica Balatti; Alexey Palamarchuk; Lara Rizzotto; Dario Veneziano; Giovanni Nigita; Laura Z Rassenti; Harvey I Pass; Thomas J Kipps; Chang-Gong Liu; Carlo M Croce
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

9.  CLP1 founder mutation links tRNA splicing and maturation to cerebellar development and neurodegeneration.

Authors:  Ashleigh E Schaffer; Veerle R C Eggens; Ahmet Okay Caglayan; Miriam S Reuter; Eric Scott; Nicole G Coufal; Jennifer L Silhavy; Yuanchao Xue; Hulya Kayserili; Katsuhito Yasuno; Rasim Ozgur Rosti; Mostafa Abdellateef; Caner Caglar; Paul R Kasher; J Leonie Cazemier; Marian A Weterman; Vincent Cantagrel; Na Cai; Christiane Zweier; Umut Altunoglu; N Bilge Satkin; Fesih Aktar; Beyhan Tuysuz; Cengiz Yalcinkaya; Huseyin Caksen; Kaya Bilguvar; Xiang-Dong Fu; Christopher R Trotta; Stacey Gabriel; André Reis; Murat Gunel; Frank Baas; Joseph G Gleeson
Journal:  Cell       Date:  2014-04-24       Impact factor: 41.582

10.  Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets.

Authors:  Pankaj Kumar; Jordan Anaya; Suresh B Mudunuri; Anindya Dutta
Journal:  BMC Biol       Date:  2014-10-01       Impact factor: 7.431

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  18 in total

1.  Serum transfer RNA-derived fragment tRF-31-79MP9P9NH57SD acts as a novel diagnostic biomarker for non-small cell lung cancer.

Authors:  Jipeng Li; Chao Cao; Laifu Fang; Wanjun Yu
Journal:  J Clin Lab Anal       Date:  2022-05-16       Impact factor: 3.124

2.  Osteogenic Effect of tsRNA-10277-Loaded Exosome Derived from Bone Mesenchymal Stem Cells on Steroid-Induced Osteonecrosis of the Femoral Head.

Authors:  Shanhong Fang; Tianmin He; Jiarun Jiang; Yongfeng Li; Peng Chen
Journal:  Drug Des Devel Ther       Date:  2020-10-28       Impact factor: 4.162

Review 3.  The Landscape of Regulatory Noncoding RNAs in Ewing's Sarcoma.

Authors:  Connor Barrett; Anuj Budhiraja; Vijay Parashar; Mona Batish
Journal:  Biomedicines       Date:  2021-07-31

Review 4.  Novel insights into the roles of tRNA-derived small RNAs.

Authors:  Qiyu Pan; Tingting Han; Guoping Li
Journal:  RNA Biol       Date:  2021-05-17       Impact factor: 4.652

Review 5.  The Malignant Role of Exosomes as Nanocarriers of Rare RNA Species.

Authors:  Alina-Andreea Zimta; Olafur Eysteinn Sigurjonsson; Diana Gulei; Ciprian Tomuleasa
Journal:  Int J Mol Sci       Date:  2020-08-15       Impact factor: 5.923

6.  tRNA-Derived Fragments (tRFs) in Bladder Cancer: Increased 5'-tRF-LysCTT Results in Disease Early Progression and Patients' Poor Treatment Outcome.

Authors:  Maria-Alexandra Papadimitriou; Margaritis Avgeris; Panagiotis Levis; Evangelia Ch Papasotiriou; Georgios Kotronopoulos; Konstantinos Stravodimos; Andreas Scorilas
Journal:  Cancers (Basel)       Date:  2020-12-06       Impact factor: 6.639

7.  ELAC2, an Enzyme for tRNA Maturation, Plays a Role in the Cleavage of a Mature tRNA to Produce a tRNA-Derived RNA Fragment During Respiratory Syncytial Virus Infection.

Authors:  Eun-Jin Choi; Wenzhe Wu; Ke Zhang; Inhan Lee; In-Hoo Kim; Yong Sun Lee; Xiaoyong Bao
Journal:  Front Mol Biosci       Date:  2021-02-02

8.  Serum hsa_tsr016141 as a Kind of tRNA-Derived Fragments Is a Novel Biomarker in Gastric Cancer.

Authors:  Xinliang Gu; Shuo Ma; Bo Liang; Shaoqing Ju
Journal:  Front Oncol       Date:  2021-05-13       Impact factor: 6.244

9.  Transfer-RNA-Derived Fragments Are Potential Prognostic Factors in Patients with Squamous Cell Carcinoma of the Head and Neck.

Authors:  Xiaolian Gu; Lixiao Wang; Philip J Coates; Linda Boldrup; Robin Fåhraeus; Torben Wilms; Nicola Sgaramella; Karin Nylander
Journal:  Genes (Basel)       Date:  2020-11-13       Impact factor: 4.096

10.  Plasma tRNA-derived small RNAs signature as a predictive and prognostic biomarker in lung adenocarcinoma.

Authors:  Jun Wang; Xianyu Liu; Weifang Cui; Qun Xie; Wei Peng; Heng Zhang; Yang Gao; Chunfang Zhang; Chaojun Duan
Journal:  Cancer Cell Int       Date:  2022-02-03       Impact factor: 5.722

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