| Literature DB >> 32192110 |
Maciej Bujak1, Dawid Siodłak1.
Abstract
Halogenidoantimonate(III) monohydrates of the (C4H12N2)[SbX5]·H2O (X = Cl, 1 or Br, 2) formula, crystallizing in the same monoclinic space group of P21/n, are isostructural, with an isostructurality index close to 99%. The single crystal X-ray diffraction data do not show any indication of phase transition in cooling these crystals from room temperature to 85 K. Both hybrid crystals are built up from [SbX6]3- octahedra that are joined together by a common edge forming isolated bioctahedral [Sb2X10]4- units, piperazine-1,4-diium (C4H12N2)2+ cations and water of crystallization molecules. These structural components are joined together by related but somewhat different O/N/C-H···X and N-H···O hydrogen bonded systems. The evolution of structural parameters, notably the secondary Sb-X bonds along with the associated X/Sb-Sb/X-X/Sb angles and O/N/C-H···X hydrogen bonds, as a function of ligand exchange and temperature, along with their influence on the irregularity of [SbX6]3- octahedra, was determined. The comparison of packing features and hydrogen bond parameters, additionally supported by the Hirshfeld surface analysis and data retrieved from the Cambridge Structural Database, demonstrates the hierarchy and importance of hydrogen bond interactions that influence the irregularity of single [SbX6]3- units.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; halogenidoantimonates(III); hydrogen bonding; inorganic–organic hybrid materials; low temperature; octahedral distortion
Mesh:
Substances:
Year: 2020 PMID: 32192110 PMCID: PMC7144372 DOI: 10.3390/molecules25061361
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Selected crystal data for 1 and 2 at 295 and 85 K.
| Compound | 1 | 1 | 2 | 2 |
|---|---|---|---|---|
| T (K) | 295(2) | 85.0(5) | 295(2) | 85.0(5) |
| Formula | C4H14Cl5N2OSb | C4H14Cl5N2OSb | C4H14Br5N2OSb | C4H14Br5N2OSb |
|
| 405.18 | 405.18 | 627.43 | 627.43 |
| Crystal system | monoclinic | monoclinic | monoclinic | monoclinic |
| Space group, | ||||
| 9.54078(13) | 9.45434(13) | 9.9162(3) | 9.82225(15) | |
| 14.14260(19) | 14.05399(19) | 14.4090(4) | 14.34740(19) | |
| 10.03963(14) | 9.91376(13) | 10.3898(3) | 10.29729(16) | |
| β (°) | 99.1119(13) | 99.2085(13) | 99.432(3) | 99.7664(15) |
| 1337.57(3) | 1300.28(3) | 1464.45(7) | 1430.10(4) | |
| ρcalc (g/cm3) | 2.012 | 2.070 | 2.846 | 2.914 |
| 0.0212 | 0.0140 | 0.0252 | 0.0183 | |
| 0.0525 | 0.0327 | 0.0500 | 0.0368 |
Figure 1Packing diagrams of 1 (a) and 2 (b), along the c-axes, at 85 K. The intermolecular space accessible to the probing sphere of radius 0.70 Å and the grid spacing of 0.58 Å is indicated in yellow. The void volume is: 1.3%, 16.66 Å3 and 0.5%, 7.85 Å3 for 1 and 2, respectively.
Selected bond lengths (Å) and angles (°) for 1 (X = Cl) and 2 (X = Br) at 295 and 85 K.
| Compound | 1 | 1 | 2 | 2 |
|---|---|---|---|---|
| T (K) | 295 | 85 | 295 | 85 |
| Sb1–X1 | 2.3914(5) | 2.3936(4) | 2.5687(5) | 2.5732(3) |
| Sb1–X2 | 2.9705(6) | 2.9468(4) | 3.0884(5) | 3.0674(3) |
| Sb1–X2I | 3.2308(6) | 3.2291(4) | 3.2537(5) | 3.2528(3) |
| Sb1–X3 | 2.4433(6) | 2.4523(4) | 2.6090(5) | 2.6247(3) |
| Sb1–X4 | 2.5246(6) | 2.5247(4) | 2.7049(5) | 2.7080(3) |
| Sb1–X5 | 2.7350(6) | 2.7270(4) | 2.8731(5) | 2.8697(3) |
| Sb1···Sb1I | 4.0832(2) | 4.0099(2) | 4.3962(5) | 4.3428(3) |
| X1–Sb1–X2 | 85.66(2) | 85.073(12) | 87.479(14) | 87.133(9) |
| X1–Sb1–X2I | 175.28(2) | 174.247(12) | 176.077(16) | 175.030(11) |
| X1–Sb1–X3 | 91.13(3) | 91.066(14) | 92.652(17) | 92.467(11) |
| X1–Sb1–X4 | 90.50(2) | 90.290(13) | 91.154(15) | 91.122(10) |
| X1–Sb1–X5 | 85.66(2) | 84.948(12) | 86.920(14) | 86.227(10) |
| X2–Sb1–X2I | 97.753(14) | 99.165(9) | 92.277(11) | 93.245(8) |
| X2–Sb1–X3 | 176.70(2) | 176.075(12) | 177.960(15) | 177.964(11) |
| X2–Sb1–X4 | 89.783(15) | 89.840(11) | 90.061(12) | 90.183(9) |
| X2–Sb1–X5 | 89.695(15) | 89.388(10) | 87.614(12) | 87.392(8) |
| X2I–Sb1–X3 | 85.42(2) | 84.640(12) | 87.453(14) | 86.981(9) |
| X2I–Sb1–X4 | 92.771(17) | 93.596(11) | 92.762(12) | 93.832(9) |
| X2I–Sb1–X5 | 91.083(15) | 91.180(10) | 89.157(12) | 88.839(8) |
| X3–Sb1–X4 | 90.981(18) | 90.886(12) | 91.971(14) | 91.820(10) |
| X3–Sb1–X5 | 89.329(18) | 89.570(12) | 90.360(14) | 90.591(10) |
| X4–Sb1–X5 | 176.147(17) | 175.224(12) | 177.043(13) | 176.492(10) |
| Sb1–X2–Sb1I | 82.247(14) | 80.835(9) | 87.723(11) | 86.755(8) |
Symmetry code: (I) –x + 1, –y + 1, –z.
Hydrogen bonds geometries (Å, °) for 1 and 2 at 295 and 85 K.
| Atoms | D–H | H∙∙∙A | D∙∙∙A | D–H∙∙∙A |
|---|---|---|---|---|
| O1–H11···Cl1I | 0.85(1) | 2.95(3) | 3.449(2) | 119(3) |
| O1–H12···Cl3 | 0.85(1) | 2.71(3) | 3.414(3) | 140(4) |
| O1–H11···Cl5II | 0.85(1) | 2.70(2) | 3.399(3) | 141(3) |
| N11–H112···Cl2 | 0.89(1) | 2.35(2) | 3.201(2) | 163(2) |
| N11–H111···Cl5III | 0.89(1) | 2.76(2) | 3.3444(19) | 125(2) |
| N12–H122···Cl2IV | 0.90(1) | 2.38(2) | 3.256(2) | 165(2) |
| N12–H121···Cl5V | 0.89(1) | 2.51(2) | 3.2606(19) | 143(2) |
| C13–H132···Cl4 | 0.96(1) | 2.90(2) | 3.555(2) | 126(2) |
| C14–H141···Cl3V | 0.97(1) | 2.79(2) | 3.659(2) | 150(2) |
| C14–H142···Cl3VI | 0.96(1) | 2.84(2) | 3.675(3) | 146(2) |
| N11–H111···O1VII | 0.89(1) | 2.19(2) | 2.943(3) | 143(2) |
| O1–H11···Cl1I | 0.85(1) | 2.80(2) | 3.4198(14) | 131(2) |
| O1–H12···Cl3 | 0.85(1) | 2.57(1) | 3.3512(15) | 155(2) |
| O1–H11···Cl5II | 0.85(1) | 2.67(2) | 3.3493(14) | 138(2) |
| N11–H112···Cl2 | 0.89(1) | 2.34(1) | 3.1859(14) | 160(2) |
| N11–H111···Cl5III | 0.90(1) | 2.76(2) | 3.3024(14) | 121(1) |
| N12–H122···Cl2IV | 0.90(1) | 2.38(1) | 3.2316(14) | 158(2) |
| N12–H121···Cl5V | 0.89(1) | 2.49(1) | 3.2287(13) | 140(2) |
| C13–H132···Cl4 | 0.96(1) | 2.86(2) | 3.5277(15) | 128(1) |
| C14–H141···Cl3V | 0.96(1) | 2.77(1) | 3.6256(16) | 148(1) |
| C14–H142···Cl3VI | 0.96(1) | 2.80(1) | 3.6358(16) | 145(1) |
| N11–H111···O1VII | 0.90(1) | 2.09(1) | 2.8926(19) | 148(2) |
| O1–H11···Br1I | 0.85(1) | 2.92(3) | 3.592(4) | 137(4) |
| O1–H12···Br3 | 0.85(1) | 2.67(2) | 3.505(4) | 169(4) |
| O1–H11···Br5II | 0.85(1) | 3.07(2) | 3.543(4) | 117(2) |
| N11–H112···Br2 | 0.90(1) | 2.56(2) | 3.374(4) | 151(3) |
| N11–H111···Br5III | 0.90(1) | 2.90(3) | 3.480(3) | 124(3) |
| N12–H122···Br2IV | 0.90(1) | 2.61(2) | 3.473(3) | 159(3) |
| N12–H121···Br5V | 0.90(1) | 2.78(3) | 3.441(3) | 132(3) |
| C13–H132···Br4 | 0.97(1) | 2.94(3) | 3.685(4) | 134(3) |
| C14–H141···Br3V | 0.97(1) | 2.87(2) | 3.779(4) | 157(3) |
| C14–H142···Br3VI | 0.97(1) | 2.95(2) | 3.787(4) | 146(3) |
| N11–H111···O1VII | 0.90(1) | 2.17(3) | 2.939(5) | 142(3) |
| O1–H11···Br1I | 0.85(1) | 2.93(2) | 3.551(2) | 132(3) |
| O1–H12···Br3 | 0.85(1) | 2.61(2) | 3.433(2) | 165(4) |
| O1–H11···Br5II | 0.85(1) | 2.99(2) | 3.502(3) | 121(2) |
| N11–H112···Br2 | 0.90(1) | 2.51(2) | 3.358(2) | 157(3) |
| N11–H111···Br5III | 0.90(1) | 2.96(3) | 3.443(2) | 115(2) |
| N12–H122···Br2IV | 0.91(1) | 2.58(2) | 3.437(2) | 158(3) |
| N12–H121···Br5V | 0.90(1) | 2.75(2) | 3.410(2) | 131(2) |
| C13–H132···Br4 | 0.98(1) | 2.93(2) | 3.657(3) | 133(2) |
| C14–H141···Br3V | 0.97(1) | 2.87(2) | 3.746(3) | 152(2) |
| C14–H142···Br3VI | 0.97(1) | 2.92(2) | 3.743(3) | 143(2) |
| N11–H111···O1VII | 0.90(1) | 2.08(2) | 2.896(3) | 151(3) |
Symmetry codes: (I) –x + 1/2, y – 1/2, –z + 1/2; (II) x + 1/2, –y + 1/2, z + 1/2; (III) –x + 1, –y + 1, –z; (IV) x + 1/2, –y + 3/2, z + 1/2; (V) –x + 1/2, y + 1/2, –z + 1/2; (VI) –x + 1, –y + 1, –z + 1; (VII) –x + 3/2, y + 1/2, –z + 1/2.
Figure 2The N/O–H···Cl hydrogen bonds represented by the broken red lines to Cl2 and Cl5 atoms (a) along with the corresponding Hirshfeld surface mapped with dnorm for the [Sb2Cl10]4− bioctahedral unit (b) in 1 at 85 K. The overlapping surfaces are marked in red, touching in white, whereas separated in navy blue (b). Symmetry codes: (I) –x + 1, –y + 1, –z; (II) x – 1/2, –y + 3/2, z – 1/2; (III) x – 1/2, –y + 1/2, z – 1/2; (IV) –x + 1/2, y – 1/2, –z + 1/2.
Residual δ charges on the X atoms for 1 (X = Cl) and 2 (X = Br) at 295 and 85 K.
| Compound | 1 | 1 | 2 | 2 |
|---|---|---|---|---|
| Atoms/T (K) | 295 | 85 | 295 | 85 |
| X1 | –0.15 | –0.16 | –0.20 | –0.21 |
| X2 | –0.65 | –0.64 | –0.54 | –0.53 |
| X2I | –0.65 | –0.64 | –0.54 | –0.53 |
| X3 | –0.25 | –0.26 | –0.27 | –0.29 |
| X4 | –0.38 | –0.38 | –0.40 | –0.40 |
| X5 | –0.62 | –0.61 | –0.58 | –0.58 |
Symmetry code: (I) –x + 1, –y + 1, –z.
Distortion Δ and σ2 parameters for [SbX6]3– octahedra for 1 (X = Cl) and 2 (X = Br) at 295 and 85 K.
| Parameter | Bond Length Distortion, Δ × 103 | Bond Angle Distortion, σ2 | ||
|---|---|---|---|---|
| Compound/T (K) | 295 | 85 | 295 | 85 |
|
| 12.35 | 11.93 | 11.88 | 16.31 |
|
| 7.77 | 7.34 | 4.90 | 6.91 |
Figure 3Hirshfeld surfaces mapped with dnorm for the piperazine-1,4-diium cations in 1 and 2 at 295 (a,c) and 85 K (b,d), respectively. The overlapping surfaces are marked in red, touching in white, whereas separated in navy blue.