Literature DB >> 32173796

Experimental and theoretical energetics of walking molecular motors under fluctuating environments.

Takayuki Ariga1, Michio Tomishige2, Daisuke Mizuno3.   

Abstract

Molecular motors are nonequilibrium open systems that convert chemical energy to mechanical work. Their energetics are essential for various dynamic processes in cells, but largely remain unknown because fluctuations typically arising in small systems prevent investigation of the nonequilibrium behavior of the motors in terms of thermodynamics. Recently, Harada and Sasa proposed a novel equality to measure the dissipation of nonequilibrium small systems. By utilizing this equality, we have investigated the nonequilibrium energetics of the single-molecule walking motor kinesin-1. The dissipation from kinesin movement was measured through the motion of an attached probe particle and its response to external forces, indicating that large hidden dissipation exists. In this short review, aiming to readers who are not familiar with nonequilibrium physics, we briefly introduce the theoretical basis of the dissipation measurement as well as our recent experimental results and mathematical model analysis and discuss the physiological implications of the hidden dissipation in kinesin. In addition, further perspectives on the efficiency of motors are added by considering their actual working environment: living cells.

Keywords:  Fluctuation dissipation theorem; Kinesin; Molecular motor; Nonequilibrium energetics; Single molecule manipulation

Year:  2020        PMID: 32173796      PMCID: PMC7242573          DOI: 10.1007/s12551-020-00684-7

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  34 in total

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Journal:  Trends Biochem Sci       Date:  2001-10       Impact factor: 13.807

2.  Rearrangements in hard-sphere glasses under oscillatory shear strain.

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-11-26

3.  Nonequilibrium energetics of a single F1-ATPase molecule.

Authors:  Shoichi Toyabe; Tetsuaki Okamoto; Takahiro Watanabe-Nakayama; Hiroshi Taketani; Seishi Kudo; Eiro Muneyuki
Journal:  Phys Rev Lett       Date:  2010-05-14       Impact factor: 9.161

4.  Nonequilibrium mechanics of active cytoskeletal networks.

Authors:  Daisuke Mizuno; Catherine Tardin; C F Schmidt; F C Mackintosh
Journal:  Science       Date:  2007-01-19       Impact factor: 47.728

Review 5.  Signals and noise in micromechanical measurements.

Authors:  F Gittes; C F Schmidt
Journal:  Methods Cell Biol       Date:  1998       Impact factor: 1.441

6.  Nonequilibrium Energetics of Molecular Motor Kinesin.

Authors:  Takayuki Ariga; Michio Tomishige; Daisuke Mizuno
Journal:  Phys Rev Lett       Date:  2018-11-23       Impact factor: 9.161

Review 7.  The physics of the colloidal glass transition.

Authors:  Gary L Hunter; Eric R Weeks
Journal:  Rep Prog Phys       Date:  2012-05-16

8.  Probing the stochastic, motor-driven properties of the cytoplasm using force spectrum microscopy.

Authors:  Ming Guo; Allen J Ehrlicher; Mikkel H Jensen; Malte Renz; Jeffrey R Moore; Robert D Goldman; Jennifer Lippincott-Schwartz; Frederick C Mackintosh; David A Weitz
Journal:  Cell       Date:  2014-08-14       Impact factor: 41.582

9.  A universal pathway for kinesin stepping.

Authors:  Bason E Clancy; William M Behnke-Parks; Johan O L Andreasson; Steven S Rosenfeld; Steven M Block
Journal:  Nat Struct Mol Biol       Date:  2011-08-14       Impact factor: 15.369

10.  Kinesin rotates unidirectionally and generates torque while walking on microtubules.

Authors:  Avin Ramaiya; Basudev Roy; Michael Bugiel; Erik Schäffer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-25       Impact factor: 11.205

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  1 in total

1.  Biophysical Reviews' national biophysical society partnership program.

Authors:  Damien Hall
Journal:  Biophys Rev       Date:  2020-04-29
  1 in total

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