Literature DB >> 32172451

Recent advances in bioimaging with high-speed atomic force microscopy.

Takayuki Uchihashi1,2, Christian Ganser3,4.   

Abstract

Among various microscopic techniques for characterizing protein structures and functions, high-speed atomic force microscopy (HS-AFM) is a unique technique in that it allows direct visualization of structural changes and molecular interactions of proteins without any labeling in a liquid environment. Since the development of the HS-AFM was first reported in 2001, it has been applied to analyze the dynamics of various types of proteins, including motor proteins, membrane proteins, DNA-binding proteins, amyloid proteins, and artificial proteins. This method has now become a versatile tool indispensable for biophysical research. This short review summarizes some bioimaging applications of HS-AFM reported in the last few years and novel applications of HS-AFM utilizing the unique ability of AFM to gain mechanical properties of samples in addition to structural information.

Keywords:  Conformational dynamics; High-speed atomic force microscopy; Intermolecular interaction; Mechanical indentation; Single-molecule imaging

Year:  2020        PMID: 32172451      PMCID: PMC7242530          DOI: 10.1007/s12551-020-00670-z

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  31 in total

1.  Roles of the two ATP binding sites of ClpB from Thermus thermophilus.

Authors:  Yo-hei Watanabe; Ken Motohashi; Masasuke Yoshida
Journal:  J Biol Chem       Date:  2001-12-10       Impact factor: 5.157

2.  A high-speed atomic force microscope for studying biological macromolecules.

Authors:  T Ando; N Kodera; E Takai; D Maruyama; K Saito; A Toda
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

3.  High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin.

Authors:  Mikihiro Shibata; Hayato Yamashita; Takayuki Uchihashi; Hideki Kandori; Toshio Ando
Journal:  Nat Nanotechnol       Date:  2010-02-14       Impact factor: 39.213

4.  High-speed near-field fluorescence microscopy combined with high-speed atomic force microscopy for biological studies.

Authors:  Takayuki Umakoshi; Shingo Fukuda; Ryota Iino; Takayuki Uchihashi; Toshio Ando
Journal:  Biochim Biophys Acta Gen Subj       Date:  2019-03-16       Impact factor: 3.770

5.  High-speed atomic force microscopy: cooperative adhesion and dynamic equilibrium of junctional microdomain membrane proteins.

Authors:  Adai Colom; Ignacio Casuso; Thomas Boudier; Simon Scheuring
Journal:  J Mol Biol       Date:  2012-07-14       Impact factor: 5.469

6.  High-speed atomic force microscopy shows that annexin V stabilizes membranes on the second timescale.

Authors:  Atsushi Miyagi; Christophe Chipot; Martina Rangl; Simon Scheuring
Journal:  Nat Nanotechnol       Date:  2016-06-06       Impact factor: 39.213

Review 7.  High-speed atomic force microscopy and its future prospects.

Authors:  Toshio Ando
Journal:  Biophys Rev       Date:  2017-12-18

8.  Single-molecule techniques in biophysics: a review of the progress in methods and applications.

Authors:  Helen Miller; Zhaokun Zhou; Jack Shepherd; Adam J M Wollman; Mark C Leake
Journal:  Rep Prog Phys       Date:  2018-02

9.  Real-time visualization of conformational changes within single MloK1 cyclic nucleotide-modulated channels.

Authors:  Martina Rangl; Atsushi Miyagi; Julia Kowal; Henning Stahlberg; Crina M Nimigean; Simon Scheuring
Journal:  Nat Commun       Date:  2016-09-20       Impact factor: 14.919

10.  Structural pathway of regulated substrate transfer and threading through an Hsp100 disaggregase.

Authors:  Célia Deville; Marta Carroni; Kamila B Franke; Maya Topf; Bernd Bukau; Axel Mogk; Helen R Saibil
Journal:  Sci Adv       Date:  2017-08-04       Impact factor: 14.136

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  7 in total

1.  Biophysical Reviews' national biophysical society partnership program.

Authors:  Damien Hall
Journal:  Biophys Rev       Date:  2020-04-29

2.  Multiple dimeric structures and strand-swap dimerization of E-cadherin in solution visualized by high-speed atomic force microscopy.

Authors:  Shigetaka Nishiguchi; Tadaomi Furuta; Takayuki Uchihashi
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-22       Impact factor: 12.779

3.  Practical considerations for feature assignment in high-speed AFM of live cell membranes.

Authors:  Damien Hall; Adam S Foster
Journal:  Biophys Physicobiol       Date:  2022-04-15

Review 4.  High-Speed Atomic Force Microscopy Reveals the Structural Dynamics of the Amyloid-β and Amylin Aggregation Pathways.

Authors:  Takahiro Watanabe-Nakayama; Bikash R Sahoo; Ayyalusamy Ramamoorthy; Kenjiro Ono
Journal:  Int J Mol Sci       Date:  2020-06-16       Impact factor: 5.923

5.  Quantitative Visualization of the Interaction between Complement Component C1 and Immunoglobulin G: The Effect of CH1 Domain Deletion.

Authors:  Saeko Yanaka; Shigetaka Nishiguchi; Rina Yogo; Hiroki Watanabe; Jiana Shen; Hirokazu Yagi; Takayuki Uchihashi; Koichi Kato
Journal:  Int J Mol Sci       Date:  2022-02-14       Impact factor: 5.923

6.  Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.

Authors:  Cheng Tan; Jaewoon Jung; Chigusa Kobayashi; Diego Ugarte La Torre; Shoji Takada; Yuji Sugita
Journal:  PLoS Comput Biol       Date:  2022-04-05       Impact factor: 4.779

7.  Physical Properties and Reactivity of Microdomains in Phosphatidylinositol-Containing Supported Lipid Bilayer.

Authors:  Toshinori Motegi; Kingo Takiguchi; Yohko Tanaka-Takiguchi; Toshiki Itoh; Ryugo Tero
Journal:  Membranes (Basel)       Date:  2021-05-03
  7 in total

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