Literature DB >> 32168597

Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics.

Luke K Davis1,2,3, Ian J Ford1,2, Anđela Šarić2,3, Bart W Hoogenboom1,2,3.   

Abstract

In the nuclear pore complex, intrinsically disordered nuclear pore proteins (FG Nups) form a selective barrier for transport into and out of the cell nucleus, in a way that remains poorly understood. The collective FG Nup behavior has long been conceptualized either as a polymer brush, dominated by entropic and excluded-volume (repulsive) interactions, or as a hydrogel, dominated by cohesive (attractive) interactions between FG Nups. Here we compare mesoscale computational simulations with a wide range of experimental data to demonstrate that FG Nups are at the crossover point between these two regimes. Specifically, we find that repulsive and attractive interactions are balanced, resulting in morphologies and dynamics that are close to those of ideal polymer chains. We demonstrate that this property of FG Nups yields sufficient cohesion to seal the transport barrier, and yet maintains fast dynamics at the molecular scale, permitting the rapid polymer rearrangements needed for transport events.

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Year:  2020        PMID: 32168597     DOI: 10.1103/PhysRevE.101.022420

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  8 in total

1.  Crowding-induced phase separation of nuclear transport receptors in FG nucleoporin assemblies.

Authors:  Luke K Davis; Ian J Ford; Bart W Hoogenboom
Journal:  Elife       Date:  2022-01-31       Impact factor: 8.140

2.  Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment.

Authors:  Bart W Hoogenboom; Loren E Hough; Edward A Lemke; Roderick Y H Lim; Patrick R Onck; Anton Zilman
Journal:  Phys Rep       Date:  2021-03-24       Impact factor: 30.510

3.  Physical modeling of multivalent interactions in the nuclear pore complex.

Authors:  Luke K Davis; Anđela Šarić; Bart W Hoogenboom; Anton Zilman
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

4.  A designer FG-Nup that reconstitutes the selective transport barrier of the nuclear pore complex.

Authors:  Alessio Fragasso; Hendrik W de Vries; John Andersson; Eli O van der Sluis; Erik van der Giessen; Andreas Dahlin; Patrick R Onck; Cees Dekker
Journal:  Nat Commun       Date:  2021-03-31       Impact factor: 14.919

5.  Free energy calculations shed light on the nuclear pore complex's selective barrier nature.

Authors:  Atsushi Matsuda; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2021-07-31       Impact factor: 3.699

Review 6.  On the nuclear pore complex and its emerging role in cellular mechanotransduction.

Authors:  Atsushi Matsuda; Mohammad R K Mofrad
Journal:  APL Bioeng       Date:  2022-03-10

7.  DNA-Origami NanoTrap for Studying the Selective Barriers Formed by Phenylalanine-Glycine-Rich Nucleoporins.

Authors:  Qi Shen; Taoran Tian; Qiancheng Xiong; Patrick D Ellis Fisher; Yong Xiong; Thomas J Melia; C Patrick Lusk; Chenxiang Lin
Journal:  J Am Chem Soc       Date:  2021-07-29       Impact factor: 16.383

Review 8.  Strength in Diversity: Nuclear Export of Viral RNAs.

Authors:  Jón Pol Gales; Julie Kubina; Angèle Geldreich; Maria Dimitrova
Journal:  Viruses       Date:  2020-09-11       Impact factor: 5.048

  8 in total

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