Literature DB >> 32162068

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Evelien M Adriaenssens1, Matthew B Sullivan2, Petar Knezevic3, Leonardo J van Zyl4, B L Sarkar5, Bas E Dutilh6,7, Poliane Alfenas-Zerbini8, Małgorzata Łobocka9, Yigang Tong10, James Rodney Brister11, Andrea I Moreno Switt12, Jochen Klumpp13, Ramy Karam Aziz14, Jakub Barylski15, Jumpei Uchiyama16, Rob A Edwards17,18, Andrew M Kropinski19,20, Nicola K Petty21, Martha R J Clokie22, Alla I Kushkina23, Vera V Morozova24, Siobain Duffy25, Annika Gillis26, Janis Rumnieks27, İpek Kurtböke28, Nina Chanishvili29, Lawrence Goodridge30, Johannes Wittmann31, Rob Lavigne32, Ho Bin Jang33, David Prangishvili34,35, Francois Enault36, Dann Turner37, Minna M Poranen38, Hanna M Oksanen38, Mart Krupovic34.   

Abstract

This article is a summary of the activities of the ICTV's Bacterial and Archaeal Viruses Subcommittee for the years 2018 and 2019. Highlights include the creation of a new order, 10 families, 22 subfamilies, 424 genera and 964 species. Some of our concerns about the ICTV's ability to adjust to and incorporate new DNA- and protein-based taxonomic tools are discussed.

Year:  2020        PMID: 32162068     DOI: 10.1007/s00705-020-04577-8

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  49 in total

1.  IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.

Authors:  Simon Roux; David Páez-Espino; I-Min A Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T B K Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y Neches; Tanja Woyke; Natalia N Ivanova; Emiley A Eloe-Fadrosh; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

2.  Seeker: alignment-free identification of bacteriophage genomes by deep learning.

Authors:  Noam Auslander; Ayal B Gussow; Sean Benler; Yuri I Wolf; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

3.  Metagenomic analysis of wastewater phageome from a University Hospital in Turkey.

Authors:  Hanife Salih; Abdulkerim Karaynir; Melis Yalcin; Erman Oryasin; Can Holyavkin; Gamze Basbulbul; Bulent Bozdogan
Journal:  Arch Microbiol       Date:  2022-05-30       Impact factor: 2.552

4.  Characterization and Complete Genomic Analysis of Vibrio Parahaemolyticus-Infecting Phage KIT05.

Authors:  Vo Thi Tu Anh; Nguyen Huan Pham-Khanh; Nguyen Song Han; Hirofumi Sunahara; Kaeko Kamei
Journal:  Curr Microbiol       Date:  2022-06-15       Impact factor: 2.188

5.  Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection.

Authors:  Enea Maffei; Aisylu Shaidullina; Marco Burkolter; Yannik Heyer; Fabienne Estermann; Valentin Druelle; Patrick Sauer; Luc Willi; Sarah Michaelis; Hubert Hilbi; David S Thaler; Alexander Harms
Journal:  PLoS Biol       Date:  2021-11-16       Impact factor: 8.029

6.  Genomic analysis of a novel active prophage of Hafnia paralvei.

Authors:  Lingting Pan; Dengfeng Li; Wei Lin; Wencai Liu; Weinan Qin; Lihua Xu; Yigang Tong
Journal:  Arch Virol       Date:  2022-06-25       Impact factor: 2.685

7.  Efficient dilution-to-extinction isolation of novel virus-host model systems for fastidious heterotrophic bacteria.

Authors:  Holger H Buchholz; Michelle L Michelsen; Luis M Bolaños; Emily Browne; Michael J Allen; Ben Temperton
Journal:  ISME J       Date:  2021-01-25       Impact factor: 10.302

8.  Engineering the Modular Receptor-Binding Proteins of Klebsiella Phages Switches Their Capsule Serotype Specificity.

Authors:  Agnieszka Latka; Sebastien Lemire; Dennis Grimon; Dorien Dams; Barbara Maciejewska; Timothy Lu; Zuzanna Drulis-Kawa; Yves Briers
Journal:  mBio       Date:  2021-05-04       Impact factor: 7.867

9.  Isolation and characterization of lytic phage TUN1 specific for Klebsiella pneumoniae K64 clinical isolates from Tunisia.

Authors:  Simone Eckstein; Jana Stender; Sonia Mzoughi; Kilian Vogele; Jana Kühn; Daniela Friese; Christina Bugert; Susann Handrick; Mustapha Ferjani; Roman Wölfel; Andrew Millard; Mohamed Ben Moussa; Joachim J Bugert
Journal:  BMC Microbiol       Date:  2021-06-21       Impact factor: 3.605

10.  Characterisation of Bacteriophage-Encoded Depolymerases Selective for Key Klebsiella pneumoniae Capsular Exopolysaccharides.

Authors:  George Blundell-Hunter; Mark C Enright; David Negus; Matthew J Dorman; Gemma E Beecham; Derek J Pickard; Phitchayapak Wintachai; Supayang P Voravuthikunchai; Nicholas R Thomson; Peter W Taylor
Journal:  Front Cell Infect Microbiol       Date:  2021-06-18       Impact factor: 5.293

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