Literature DB >> 32161136

Stochastic activation and bistability in a Rab GTPase regulatory network.

Urban Bezeljak1, Hrushikesh Loya2, Beata Kaczmarek1, Timothy E Saunders3,4, Martin Loose5.   

Abstract

The eukaryotic endomembrane system is controlled by small GTPases of the Rab family, which are activated at defined times and locations in a switch-like manner. While this switch is well understood for an individual protein, how regulatory networks produce intracellular activity patterns is currently not known. Here, we combine in vitro reconstitution experiments with computational modeling to study a minimal Rab5 activation network. We find that the molecular interactions in this system give rise to a positive feedback and bistable collective switching of Rab5. Furthermore, we find that switching near the critical point is intrinsically stochastic and provide evidence that controlling the inactive population of Rab5 on the membrane can shape the network response. Notably, we demonstrate that collective switching can spread on the membrane surface as a traveling wave of Rab5 activation. Together, our findings reveal how biochemical signaling networks control vesicle trafficking pathways and how their nonequilibrium properties define the spatiotemporal organization of the cell.

Entities:  

Keywords:  Rab5; bistability; positive feedback; stochasticity

Mesh:

Substances:

Year:  2020        PMID: 32161136      PMCID: PMC7104049          DOI: 10.1073/pnas.1921027117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

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3.  Stochastic activation and bistability in a Rab GTPase regulatory network.

Authors:  Urban Bezeljak; Hrushikesh Loya; Beata Kaczmarek; Timothy E Saunders; Martin Loose
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-11       Impact factor: 11.205

4.  A novel Rab5 GDP/GTP exchange factor complexed to Rabaptin-5 links nucleotide exchange to effector recruitment and function.

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Journal:  Cell       Date:  1997-09-19       Impact factor: 41.582

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Journal:  Methods       Date:  2016-10-03       Impact factor: 3.608

6.  A theory of biological pattern formation.

Authors:  A Gierer; H Meinhardt
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7.  Yip3 catalyses the dissociation of endosomal Rab-GDI complexes.

Authors:  Ulf Sivars; Dikran Aivazian; Suzanne R Pfeffer
Journal:  Nature       Date:  2003-10-23       Impact factor: 49.962

8.  Rabaptin-5-independent membrane targeting and Rab5 activation by Rabex-5 in the cell.

Authors:  Huaiping Zhu; Guangyu Zhu; Jay Liu; Zhimin Liang; Xuejun C Zhang; Guangpu Li
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9.  Ubiquitin binding and conjugation regulate the recruitment of Rabex-5 to early endosomes.

Authors:  Rafael Mattera; Juan S Bonifacino
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Review 10.  Review series: Rab GTPases and membrane identity: causal or inconsequential?

Authors:  Francis A Barr
Journal:  J Cell Biol       Date:  2013-07-22       Impact factor: 10.539

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  5 in total

1.  Stochastic activation and bistability in a Rab GTPase regulatory network.

Authors:  Urban Bezeljak; Hrushikesh Loya; Beata Kaczmarek; Timothy E Saunders; Martin Loose
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-11       Impact factor: 11.205

2.  Stochasticity and positive feedback enable enzyme kinetics at the membrane to sense reaction size.

Authors:  Albert A Lee; William Y C Huang; Scott D Hansen; Neil H Kim; Steven Alvarez; Jay T Groves
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 12.779

3.  Impact of C-terminal truncations in the Arabidopsis Rab escort protein (REP) on REP-Rab interaction and plant fertility.

Authors:  Małgorzata Gutkowska; Magdalena Kaus-Drobek; Marta Hoffman-Sommer; Magdalena Małgorzata Pamuła; Anna Daria Leja; Małgorzata Perycz; Małgorzata Lichocka; Agnieszka Witek; Magdalena Wojtas; Michał Dadlez; Ewa Swiezewska; Liliana Surmacz
Journal:  Plant J       Date:  2021-10-16       Impact factor: 7.091

Review 4.  Physics of compartmentalization: How phase separation and signaling shape membrane and organelle identity.

Authors:  Elisa Floris; Andrea Piras; Luca Dall'Asta; Andrea Gamba; Emilio Hirsch; Carlo C Campa
Journal:  Comput Struct Biotechnol J       Date:  2021-05-24       Impact factor: 7.271

Review 5.  Who's in control? Principles of Rab GTPase activation in endolysosomal membrane trafficking and beyond.

Authors:  Ann-Christin Borchers; Lars Langemeyer; Christian Ungermann
Journal:  J Cell Biol       Date:  2021-08-12       Impact factor: 10.539

  5 in total

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